BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0079.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01781 [J] COG2913 Small protein A (tmRNA-binding) Sme Sinorhi...   117   8e-27
BMEI1184 [J] COG2913 Small protein A (tmRNA-binding) Bme Brucell...   115   2e-26
mll8419 [J] COG2913 Small protein A (tmRNA-binding) Mlo Mesorhiz...   110   1e-24
AGc2171 [J] COG2913 Small protein A (tmRNA-binding) Atu Agrobact...   101   5e-22
CC1365 [J] COG2913 Small protein A (tmRNA-binding) Ccr Caulobact...    69   2e-12

>SMc01781 [J] COG2913 Small protein A (tmRNA-binding) Sme Sinorhizobium
           meliloti
          Length = 168

 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 67/88 (76%)

Query: 1   VLIVLGTPSTVATLDGEVFYYISQRTSRPVAFMNQRVIDQRVIAVYFDKNRQVRRLANYG 60
           VL+ LGTPST AT D EVFYYISQ   RPVAFM  ++IDQ ++AVYFDK   V +LA+Y 
Sbjct: 62  VLLSLGTPSTTATFDNEVFYYISQTRKRPVAFMKPKIIDQSILAVYFDKEGTVSQLAHYT 121

Query: 61  LKDGKIFDFVSRSTPTSGQEMSYLTPLF 88
           +KDGK+FD ++R+TPT G+E S+L  L 
Sbjct: 122 MKDGKVFDMLTRTTPTGGKESSFLGQLL 149


>BMEI1184 [J] COG2913 Small protein A (tmRNA-binding) Bme Brucella melitensis
          Length = 167

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 73/92 (79%)

Query: 1   VLIVLGTPSTVATLDGEVFYYISQRTSRPVAFMNQRVIDQRVIAVYFDKNRQVRRLANYG 60
           VL+ LGTPST AT D EVFYYISQ+  R   FM  +VI+++++A+YF+K+ +V  +ANYG
Sbjct: 64  VLLALGTPSTTATFDNEVFYYISQKRYRAAQFMKPKVIERQILAIYFNKDGKVEHIANYG 123

Query: 61  LKDGKIFDFVSRSTPTSGQEMSYLTPLFKLLS 92
           LKDGK+FDFVSR+TPTSG++ ++L  + + +S
Sbjct: 124 LKDGKLFDFVSRTTPTSGKDQTFLGQIIQGVS 155


>mll8419 [J] COG2913 Small protein A (tmRNA-binding) Mlo Mesorhizobium loti
          Length = 226

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query: 1   VLIVLGTPSTVATLDGEVFYYISQRTSRPVAFMNQRVIDQRVIAVYFDKNRQVRRLANYG 60
           VL+ LGTPST AT D E FYYISQ   R VAF   R++DQ+V+AVYF  + +V ++ANYG
Sbjct: 123 VLLALGTPSTTATFDNEAFYYISQTRKRYVAFDKPRLVDQKVLAVYFGADGRVTQIANYG 182

Query: 61  LKDGKIFDFVSRSTPTSGQEMSYL 84
           +KDGKIFDF+SR+TPT G++ ++L
Sbjct: 183 MKDGKIFDFISRTTPTGGKDQNFL 206


>AGc2171 [J] COG2913 Small protein A (tmRNA-binding) Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 196

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 65/88 (73%)

Query: 1   VLIVLGTPSTVATLDGEVFYYISQRTSRPVAFMNQRVIDQRVIAVYFDKNRQVRRLANYG 60
           VL+ +GTPST AT   EVFYYISQ+  R  AF+   +++Q ++A+YF+K+  + R ANY 
Sbjct: 87  VLLTMGTPSTTATFGNEVFYYISQKRVRRAAFLKPSLVEQNILAIYFNKDGVIERKANYT 146

Query: 61  LKDGKIFDFVSRSTPTSGQEMSYLTPLF 88
           L+DGK+FD +SR+TPT G+++++L  L 
Sbjct: 147 LQDGKVFDSISRTTPTGGKDLTFLQQLL 174


>CC1365 [J] COG2913 Small protein A (tmRNA-binding) Ccr Caulobacter
           vibrioides
          Length = 161

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 5   LGTPSTVATLDGEVFYYISQRTSRPVAFMNQRVIDQRVIAVYFD-KNRQVRRLANYGLKD 63
           LG+PS V+T D   +YYISQ T R VAF   RVI + V+A+ F+  + +V  +  Y L+D
Sbjct: 55  LGSPSAVSTFDNNTWYYISQTTDR-VAFYMPRVIKRDVVAIKFNPADEKVASVDTYTLQD 113

Query: 64  GKIFDFVSRSTPTSGQEMSYLTPLF 88
           GK+  +  R TPT G+EM+ L  L 
Sbjct: 114 GKVIAYNGRETPTRGREMTILEQLL 138