BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0073.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1179 [L] COG0776 Bacterial nucleoid DNA-binding protein Bme ...   112   2e-25
AGc2181 [L] COG0776 Bacterial nucleoid DNA-binding protein Atu A...   107   5e-24
SMc01786 [L] COG0776 Bacterial nucleoid DNA-binding protein Sme ...   107   1e-23
mlr8425 [L] COG0776 Bacterial nucleoid DNA-binding protein Mlo M...   105   3e-23
PA2738 [L] COG0776 Bacterial nucleoid DNA-binding protein Pae Ps...    86   2e-17

>BMEI1179 [L] COG0776 Bacterial nucleoid DNA-binding protein Bme Brucella
           melitensis
          Length = 128

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query: 1   VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP 60
           VGLSRTES+A VE++L E+ D +  GETVKLSSF +F VR K +RIGRNPKTG EVPI P
Sbjct: 40  VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILP 99

Query: 61  RRVMVFKPSAILKQRI 76
           RRVM FK S +LKQRI
Sbjct: 100 RRVMTFKASNVLKQRI 115


>AGc2181 [L] COG0776 Bacterial nucleoid DNA-binding protein Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 116

 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 61/76 (80%)

Query: 1  VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP 60
          VGLSRTES+  VE ++ EI + + +GE VKLSSF +F +R+K +RIGRNPKTG EVPISP
Sbjct: 23 VGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGRNPKTGEEVPISP 82

Query: 61 RRVMVFKPSAILKQRI 76
          RRVM FK S +LKQRI
Sbjct: 83 RRVMTFKASNVLKQRI 98


>SMc01786 [L] COG0776 Bacterial nucleoid DNA-binding protein Sme
          Sinorhizobium meliloti
          Length = 112

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 61/76 (80%)

Query: 1  VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP 60
          VGLSRTES+  VE V+ EI + + +GE+VKLSSF +F VR K +RIGRNPKTG EVPISP
Sbjct: 19 VGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNERIGRNPKTGEEVPISP 78

Query: 61 RRVMVFKPSAILKQRI 76
          RRVM FK S +LKQR+
Sbjct: 79 RRVMTFKASNVLKQRV 94


>mlr8425 [L] COG0776 Bacterial nucleoid DNA-binding protein Mlo
          Mesorhizobium loti
          Length = 107

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 59/76 (77%)

Query: 1  VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP 60
          VGLSRTES+  VE VL EI + + +GETVKLSSF +F VR K +RIGRNPKTG EVPI P
Sbjct: 19 VGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNERIGRNPKTGEEVPILP 78

Query: 61 RRVMVFKPSAILKQRI 76
          RRVM FK S +LK RI
Sbjct: 79 RRVMTFKSSNVLKNRI 94


>PA2738 [L] COG0776 Bacterial nucleoid DNA-binding protein Pae
          Pseudomonas aeruginosa
          Length = 100

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (65%)

Query: 1  VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP 60
          +GL++ E+   VEL  +EI   LE  E VKLS FG+F +R K QR GRNPKTG E+PI+ 
Sbjct: 17 LGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITA 76

Query: 61 RRVMVFKPSAILKQRINGHVVT 82
          RRV+ F+P   LK R+  +  T
Sbjct: 77 RRVVTFRPGQKLKARVEAYAGT 98