BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0072.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2183 [K] COG0789 Predicted transcriptional regulators Atu Agr...   155   7e-38
SMc01787 [K] COG0789 Predicted transcriptional regulators Sme Si...   152   4e-37
mlr8426 [K] COG0789 Predicted transcriptional regulators Mlo Mes...   142   6e-34
BMEI1178 [K] COG0789 Predicted transcriptional regulators Bme Br...   141   9e-34
CC1371 [K] COG0789 Predicted transcriptional regulators Ccr Caul...   123   3e-28

>AGc2183 [K] COG0789 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 203

 Score =  155 bits (391), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 116/199 (58%), Gaps = 33/199 (16%)

Query: 1   LDKAPDAFRTISEVADELDIPQHVLRFWETRFAQIKPMKRSGGRRYYRPDDVDLLKGIRR 60
           LDK+PDAFRTISEVADEL++PQHVLRFWETRF QIKPMKR GGRRYYRPDD+DLLKGIR 
Sbjct: 27  LDKSPDAFRTISEVADELNLPQHVLRFWETRFPQIKPMKRGGGRRYYRPDDIDLLKGIRH 86

Query: 61  LLYGEGYTIRGVQRILKEHGIKSVQGIADQTAAVSFGAVEEAVGNSMAEPDDLENSDGLD 120
           LLY  GYTI+GVQ++LK +G + V  IA    A     +  +    +AEP          
Sbjct: 87  LLYDHGYTIKGVQKLLKTNGNRFVAAIASGDLATMEAIMAASGEKEVAEP---------- 136

Query: 121 FDGEEGDGDEKGIDYRFVDPDEDPILSTYKAH-------AQPGKAPAAPPV-RPSVPSVD 172
                          R VDPD D ++   KA           G + A   V + S+   D
Sbjct: 137 ---------------RVVDPDGDEVVGRPKARPSGRFFGFGGGNSDAEISVGKSSIGKDD 181

Query: 173 RERLERVLQELVACRQMID 191
           +  L+  L +L+ C++++D
Sbjct: 182 QALLQEALFDLLECKRLLD 200


>SMc01787 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 176

 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 113/191 (59%), Gaps = 18/191 (9%)

Query: 1   LDKAPDAFRTISEVADELDIPQHVLRFWETRFAQIKPMKRSGGRRYYRPDDVDLLKGIRR 60
           ++K+PDAFRTISEVADELD+PQHVLRFWETRF QIKPMKR GGRRYYRP+DVDLLKGIR 
Sbjct: 1   MEKSPDAFRTISEVADELDLPQHVLRFWETRFQQIKPMKRGGGRRYYRPEDVDLLKGIRH 60

Query: 61  LLYGEGYTIRGVQRILKEHGIKSVQGIADQTAAVSFGAVEEAVGNSMAEPDDLENSDGLD 120
           LLY  GYTI+GVQ++LK +G K V  IA    A     VE    +S  EP          
Sbjct: 61  LLYDHGYTIKGVQKLLKANGNKFVAAIASGDLAT----VEALAASSNEEPA--------- 107

Query: 121 FDGEEGDGDEKGIDYRFVDPDEDPILSTYKAHAQPGKAPAAPPVRPSVPSVDRERLERVL 180
              + G  +E  I    V   + P    + +    G        + SV   DR  L+  L
Sbjct: 108 -PPKAGVAEEDQI----VGRPKAPASRRFFSFGNGGDDTEITIGKTSVGKEDRALLQEAL 162

Query: 181 QELVACRQMID 191
            +L+ C++++D
Sbjct: 163 YDLLECKRLLD 173


>mlr8426 [K] COG0789 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 210

 Score =  142 bits (357), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 21/194 (10%)

Query: 1   LDKAPDAFRTISEVADELDIPQHVLRFWETRFAQIKPMKRSGGRRYYRPDDVDLLKGIRR 60
           +DK+PDAFRTISEVA++LD+PQHVLRFWETRF QIKPMKR GGRRYYRP DV+L+KGIR 
Sbjct: 32  MDKSPDAFRTISEVAEDLDLPQHVLRFWETRFNQIKPMKRGGGRRYYRPQDVELIKGIRH 91

Query: 61  LLYGEGYTIRGVQRILKEHGIKSVQGIADQTAAVSFGAVEEAVGNSMAEPDDLENSDGLD 120
           +LY +GYTI+GVQ++L+E+G   +  I +   A    AVE       A+   L  +    
Sbjct: 92  MLYDQGYTIKGVQKLLRENGNHFLVAIGNGDMA----AVEAISQRKQADQVPLTPA---- 143

Query: 121 FDGEEGDGDEKGIDYRFVDPDEDPILSTYKAHAQPGKAPAAPPVRPSVPSVDRER---LE 177
              +   GD++ +    V P         +     GK+    PV+P    + R+    L+
Sbjct: 144 --AQPRGGDDELVGQPRVKPS--------RRFFGLGKSDEEGPVQPDSSKLSRDNRALLQ 193

Query: 178 RVLQELVACRQMID 191
             L +L+ C++++D
Sbjct: 194 EALFDLLECKRLLD 207


>BMEI1178 [K] COG0789 Predicted transcriptional regulators Bme Brucella
           melitensis
          Length = 193

 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 78/89 (87%)

Query: 1   LDKAPDAFRTISEVADELDIPQHVLRFWETRFAQIKPMKRSGGRRYYRPDDVDLLKGIRR 60
           +DK+PDAFRTISEVA++LD+PQHVLRFWETRF QIKPMKR GGRRYYRP DV+LLKGIR 
Sbjct: 15  MDKSPDAFRTISEVAEDLDLPQHVLRFWETRFTQIKPMKRGGGRRYYRPLDVELLKGIRH 74

Query: 61  LLYGEGYTIRGVQRILKEHGIKSVQGIAD 89
           LLY +GYTI+GVQR+L+E+  + +  + +
Sbjct: 75  LLYDQGYTIKGVQRLLRENNAQFIIALGN 103


>CC1371 [K] COG0789 Predicted transcriptional regulators Ccr Caulobacter
          vibrioides
          Length = 141

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 70/84 (83%)

Query: 1  LDKAPDAFRTISEVADELDIPQHVLRFWETRFAQIKPMKRSGGRRYYRPDDVDLLKGIRR 60
          + K P+AFRTISE A+EL +PQHVLRFWET+F+ I+PMKR+GGRR+YRP D+ +L G+R 
Sbjct: 1  MAKGPNAFRTISEAAEELGVPQHVLRFWETKFSFIRPMKRAGGRRFYRPQDIAVLNGVRT 60

Query: 61 LLYGEGYTIRGVQRILKEHGIKSV 84
          LL+ EG TI+GVQ++ ++HG+  V
Sbjct: 61 LLHSEGLTIKGVQKLHRDHGLAHV 84