BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0055.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ycgE [K] COG1846 Transcriptional regulators Bsu Bacillus subt...    90   3e-18
mll4834 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...    65   8e-11
VC1278 [K] COG1846 Transcriptional regulators Vch Vibrio cholerae      59   5e-09
SSO1082 [K] COG1846 Transcriptional regulators Sso Sulfolobus so...    58   8e-09

>BS_ycgE [K] COG1846 Transcriptional regulators Bsu Bacillus subtilis
          Length = 155

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 1   LSSAKSRAALMQELEEAMRRSSAQGVMYGQAVANMAGISNSDMECMDILHLEGRVTAGRL 60
           +S+  SR+ L +   +  R+   + V++ QA A   G+  +D++  DIL+  G +TAG L
Sbjct: 1   MSTRNSRSELEKTAVQLFRKLGTRTVLFHQAAAQALGLFPTDLKSADILNEAGPMTAGEL 60

Query: 61  AEVTGLTTGAITGVVDRLEKAGYV-RRERDESDRRKVFISVVEEKAAEIGKFYVPMQEAM 119
            + TGL+TG++T +VDRLEKAG     +R  +DRR+V I  +      I   + P+ E+ 
Sbjct: 61  GKKTGLSTGSVTALVDRLEKAGVCGSWKRTPNDRRRVVIVPLTASKKHIKDLFRPLSEST 120

Query: 120 LKLWSSYTDDELRLLLRF 137
           + L   YT++EL L+  F
Sbjct: 121 MDLCREYTEEELELIFSF 138


>mll4834 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 164

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 28  YGQAVANMAGISNSDMECMDILHLEGRVTAGRLAEVTGLTTGAITGVVDRLEKAGYVRRE 87
           Y +AV    G++ ++  C+ +L+  G  +AG +A  TGLT  A+T ++DRLE  G + R+
Sbjct: 32  YDEAVGARLGLNMAERHCIGLLY-GGPQSAGAIATATGLTPAAVTALIDRLEARGLLTRK 90

Query: 88  RDESDRRKVFISVVEEKAAEIGKFYVPMQEAMLKLWSSYTDDELRLLLRF 137
           R   DRRKV I   E       ++Y  + +   K+ ++++D EL  + RF
Sbjct: 91  RSLEDRRKVVIEATEATRELSARYYGAIAKEGEKVIATFSDAELATISRF 140


>VC1278 [K] COG1846 Transcriptional regulators Vch Vibrio cholerae
          Length = 159

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 27  MYGQAVANMAGISNSDMECMDILH-LEGRVTAGRLAEVTGLTTGAITGVVDRLEKAGYVR 85
           ++ + +   AG++   +  M  +H L  +VT   LA  T ++ G  T ++DRLE+ GYV+
Sbjct: 20  LHSKKLNKDAGLTGPQLILMRSIHDLGEQVTIRELAVHTNMSQGTATTILDRLERNGYVQ 79

Query: 86  RERDESDRRKVFISVVEEKAAEIGKFYVPMQEAMLKLWSSYTDDELRLLL 135
           R R  SD+RKV   + +E    + +   P+QE+ ++ +    D E  LLL
Sbjct: 80  RVRSNSDKRKVHAHLTDEGRKLLAQAPQPLQESFVEQFHQLQDWEQSLLL 129


>SSO1082 [K] COG1846 Transcriptional regulators Sso Sulfolobus solfataricus
          Length = 154

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)

Query: 37  GISNSDMECMDILHLEGRVTAGRLAEVTGLTTGAITGVVDRLEKAGYVRRERDESDRRKV 96
           G+S  + + M  L  EG+V   R+AE   LT   +T ++DRLE+   VRR R ESDRR +
Sbjct: 48  GLSYFEFKVMCALEEEGKVPMSRIAEKYMLTKAGLTSIIDRLEEKELVRRVRSESDRRVI 107

Query: 97  FISVVE---EKAAEIGKFYVPMQEAMLKLWSSYTDDELRLLLRFANDGY 142
           ++ + E   E+  E  K ++ +  + L   S  ++DE+R L R  +  +
Sbjct: 108 YVELTEKGRERLMESRKIFLNVLSSFL---SKLSEDEIRELERLFSKLF 153