BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0026.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1851 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   217   8e-57
RSc1849 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   178   4e-45
Rv2011c [K] COG1846 Transcriptional regulators Mtu Mycobacterium...    76   2e-14
MT2066 [K] COG1846 Transcriptional regulators MtC Mycobacterium ...    76   2e-14

>RSc1851 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 155

 Score =  217 bits (553), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 128/155 (82%)

Query: 1   MPNAKRTPAGEALSTLIPDLFRLNSLLFTSGDRLVAGLGLTSARWQILGAIVAAERPQPV 60
           M   K TPAG ALS LI DLFRLNS + T+GDRLVA LGLTSARWQILG + A +RPQPV
Sbjct: 1   MKPLKHTPAGAALSGLILDLFRLNSQVLTAGDRLVADLGLTSARWQILGTVNAVDRPQPV 60

Query: 61  AWLARDLGAARQNVQRIVNDLERDGLVAFETNPHHRRAQLVVLTAKGRQSFDAAMRLQLP 120
           AWLARD+GA RQNVQRIVNDLE++GLVAFE NPHH+RAQLVV+T KG+Q++ AAM+LQ P
Sbjct: 61  AWLARDMGANRQNVQRIVNDLEKEGLVAFEANPHHKRAQLVVMTEKGKQAYGAAMQLQTP 120

Query: 121 WVNGLADGLSMKDLETVSRVVTVLRGRLESGEEPD 155
           W+NGLA GL+++D++T+ +V+  LR +L+   + D
Sbjct: 121 WINGLAKGLAVEDIKTMHKVIAALRVKLDEDGDAD 155


>RSc1849 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 157

 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 111/151 (73%)

Query: 1   MPNAKRTPAGEALSTLIPDLFRLNSLLFTSGDRLVAGLGLTSARWQILGAIVAAERPQPV 60
           M   +RTPAG AL T    LF++ S + T GDRLVA LGL+S+RWQ+LG IVAAERPQPV
Sbjct: 1   MKAQERTPAGAALGTSALYLFKVASGMLTEGDRLVADLGLSSSRWQVLGTIVAAERPQPV 60

Query: 61  AWLARDLGAARQNVQRIVNDLERDGLVAFETNPHHRRAQLVVLTAKGRQSFDAAMRLQLP 120
           AWLARD+GA RQNVQRIV+DL RDG V F  NPHHRRA LV+LTA G+   + A+ L  P
Sbjct: 61  AWLARDMGANRQNVQRIVHDLARDGFVEFANNPHHRRAPLVMLTASGQNVHNRAVNLGAP 120

Query: 121 WVNGLADGLSMKDLETVSRVVTVLRGRLESG 151
           W+N LA G+  +D+E + RV+  L+ +LE G
Sbjct: 121 WMNELARGIPPEDIEIMRRVLMALQTKLEKG 151


>Rv2011c [K] COG1846 Transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 143

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 10  GEALSTLIPDLFRLNSLLFTSGDRLVAGLGLTSARWQILGAIVAAERPQPVAWLARDLGA 69
            + ++ L+ D+F L  LL  SG+ + A  G T ARWQ+L   V ++R   V   AR LG 
Sbjct: 2   SDEIARLVADVFELAGLLRRSGEVVAAREGHTQARWQLLS--VVSDRALTVPQAARRLGV 59

Query: 70  ARQNVQRIVNDLERDGLVAFETNPHHRRAQLVVLTAKGRQSFDAAMRLQLPWVNGLADGL 129
            RQ VQR+ NDL   GL     NP HR + L+VLT  GR+   A     +   N LAD +
Sbjct: 60  TRQGVQRVANDLVVCGLAELRHNPDHRTSPLLVLTENGRRVLQAITERAIVVNNRLADAV 119


>MT2066 [K] COG1846 Transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 143

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 10  GEALSTLIPDLFRLNSLLFTSGDRLVAGLGLTSARWQILGAIVAAERPQPVAWLARDLGA 69
            + ++ L+ D+F L  LL  SG+ + A  G T ARWQ+L   V ++R   V   AR LG 
Sbjct: 2   SDEIARLVADVFELAGLLRRSGEVVAAREGHTQARWQLLS--VVSDRALTVPQAARRLGV 59

Query: 70  ARQNVQRIVNDLERDGLVAFETNPHHRRAQLVVLTAKGRQSFDAAMRLQLPWVNGLADGL 129
            RQ VQR+ NDL   GL     NP HR + L+VLT  GR+   A     +   N LAD +
Sbjct: 60  TRQGVQRVANDLVVCGLAELRHNPDHRTSPLLVLTENGRRVLQAITERAIVVNNRLADAV 119