BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0002.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0277 [J] COG1188 Ribosome-associated heat shock protein impl...    85   5e-17
mlr3853 [J] COG1188 Ribosome-associated heat shock protein impli...    83   2e-16
SMc03876 [J] COG1188 Ribosome-associated heat shock protein impl...    80   1e-15
AGc4991 [J] COG1188 Ribosome-associated heat shock protein impli...    79   2e-15
NMB1176 [J] COG1188 Ribosome-associated heat shock protein impli...    64   1e-10

>BMEI0277 [J] COG1188 Ribosome-associated heat shock protein implicated in
          the recycling of the 50S subunit (S4 paralog) Bme
          Brucella melitensis
          Length = 133

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query: 3  RQRLDKWLWHARLVKARTSAAELVASGHVRVNGTREKSPGHAVKAGDVVTVALDNSVRVL 62
          RQR+DKWL+ AR+VK+R+ AA+L   G VRVN  + +   + VK GDV+T+ LD  + V 
Sbjct: 17 RQRIDKWLFFARVVKSRSLAAKLAVGGKVRVNRDKIEQAAYQVKVGDVLTITLDRRILVY 76

Query: 63 KVTGFAERRGDASSARVLYEDL 84
          KV    ERRG A  A++LYEDL
Sbjct: 77 KVLAPGERRGPAPEAQLLYEDL 98


>mlr3853 [J] COG1188 Ribosome-associated heat shock protein implicated in
          the recycling of the 50S subunit (S4 paralog) Mlo
          Mesorhizobium loti
          Length = 131

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 57/91 (62%)

Query: 3  RQRLDKWLWHARLVKARTSAAELVASGHVRVNGTREKSPGHAVKAGDVVTVALDNSVRVL 62
          RQR+DKWL+ +R VK+R+ AA+LV +G VR+N  +       VK+GDV+T+ LD  + V 
Sbjct: 9  RQRIDKWLFFSRAVKSRSLAAKLVVAGRVRINRDKAAQASDLVKSGDVLTITLDRRIFVW 68

Query: 63 KVTGFAERRGDASSARVLYEDLQAGNLQAGK 93
          KV G   RRG A  AR LYED+       G+
Sbjct: 69 KVLGAGVRRGPAEEARTLYEDMSPPPTPKGE 99


>SMc03876 [J] COG1188 Ribosome-associated heat shock protein implicated in
          the recycling of the 50S subunit (S4 paralog) Sme
          Sinorhizobium meliloti
          Length = 143

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 55/82 (67%)

Query: 3  RQRLDKWLWHARLVKARTSAAELVASGHVRVNGTREKSPGHAVKAGDVVTVALDNSVRVL 62
          RQRLDKWL+ ARL+K+R+ A + + +GHV VNG RE      +KAGD++ V+L+    V+
Sbjct: 12 RQRLDKWLFFARLIKSRSLAQKAIEAGHVAVNGKRETQSSAQIKAGDMLEVSLERRDLVV 71

Query: 63 KVTGFAERRGDASSARVLYEDL 84
          +V     RRG    AR+LYEDL
Sbjct: 72 RVLLPGSRRGPYEEARLLYEDL 93


>AGc4991 [J] COG1188 Ribosome-associated heat shock protein implicated in
          the recycling of the 50S subunit (S4 paralog) Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 138

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%)

Query: 3  RQRLDKWLWHARLVKARTSAAELVASGHVRVNGTREKSPGHAVKAGDVVTVALDNSVRVL 62
          RQRLDKWL+ AR+ K+R+ A   + SGHV+VNG   + P H +KAGD + +  +   +VL
Sbjct: 12 RQRLDKWLFFARMAKSRSLAQSYIQSGHVKVNGATIRQPSHMLKAGDRLDIGFERMDKVL 71

Query: 63 KVTGFAERRGDASSARVLYED 83
           V     RRG    AR+LY+D
Sbjct: 72 VVKSGGARRGPYEEARLLYDD 92


>NMB1176 [J] COG1188 Ribosome-associated heat shock protein implicated in
          the recycling of the 50S subunit (S4 paralog) Nme
          Neisseria meningitidis MC58
          Length = 133

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 5  RLDKWLWHARLVKARTSAAELVASGHVRVNGTREKSPGHAVKAGDVVTVALDNSVRVLKV 64
          RLDKWLW AR  K R+ A + +  G V+VNG++ K+    +  GD++ + L++    +KV
Sbjct: 11 RLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKN-SKTIDIGDIIDLTLNSLPYKIKV 69

Query: 65 TGFAERRGDASSARVLYED 83
           G   +R  AS AR+LYE+
Sbjct: 70 KGLNHQRRPASEARLLYEE 88