BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0029.p         (225 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll6338 [NU] COG1450 Type II secretory pathway, component PulD M...   297   2e-80
PA1716 [NU] COG1450 Type II secretory pathway, component PulD Pa...   103   5e-22
RSp0874 [NU] COG1450 Type II secretory pathway, component PulD R...    97   4e-20
YPCD1.52 [NU] COG1450 Type II secretory pathway, component PulD ...    96   8e-20
ZescC [NU] COG1450 Type II secretory pathway, component PulD EcZ...    62   8e-10

>mll6338 [NU] COG1450 Type II secretory pathway, component PulD Mlo
           Mesorhizobium loti
          Length = 220

 Score =  297 bits (760), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 166/211 (78%), Gaps = 2/211 (0%)

Query: 5   RILYAGGFICLGMVSALGAPLSLPSAPYSYTVLDQDLSAALQEFGNNLNIRVNVSTEVKG 64
           R+L AG F+  G    LG PLSL   PY YTVLDQD+S ALQ+FGNNLNIRVN+S EVKG
Sbjct: 2   RLLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVKG 61

Query: 65  RIRGRMPDLPPREFLERLTNLYNLQWYYDGLVLYISAAHEAQSRLMVLSPISFDAFKTAL 124
           RIRG MPDLPPREFL+RL N+Y LQWYYDGLVLY+SAA E+Q+R++VL+ I FD FK AL
Sbjct: 62  RIRGSMPDLPPREFLDRLANMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGAL 121

Query: 125 DALNISDERYIVKPAPGDGLVLASGPPRFIALVDQTLKGLVAEAQARRNPAAAEGPPRDS 184
           D L ISD+RY+V+PAPGDGLVL SGPPRF ALV+QT  GLVAEAQ +  P   E P  +S
Sbjct: 122 DKLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQTFNGLVAEAQGQ--PRVHETPTSES 179

Query: 185 VLMLFRGSSSVVIRDGRPEGHYSPDAPHQDG 215
           VL LFRGSS++V+R+G PE  YS D P QDG
Sbjct: 180 VLTLFRGSSTMVVRNGLPEAAYSSDVPQQDG 210


>PA1716 [NU] COG1450 Type II secretory pathway, component PulD Pae
           Pseudomonas aeruginosa
          Length = 600

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 76/141 (53%)

Query: 24  PLSLPSAPYSYTVLDQDLSAALQEFGNNLNIRVNVSTEVKGRIRGRMPDLPPREFLERLT 83
           PL  PS PY Y    + L   L  FG N +  V VS +V  ++ GR     P+ FL+ + 
Sbjct: 22  PLDWPSLPYDYVAQGESLRDVLANFGANYDASVIVSDKVNDQVSGRFDLESPQAFLQLMA 81

Query: 84  NLYNLQWYYDGLVLYISAAHEAQSRLMVLSPISFDAFKTALDALNISDERYIVKPAPGDG 143
           +LYNL WYYDG VLY+    E QSRL+ L  +     K AL A  I + R+  +  P   
Sbjct: 82  SLYNLGWYYDGTVLYVFKTTEMQSRLVRLEQVGEAELKRALTAAGIWEARFGWRADPSGR 141

Query: 144 LVLASGPPRFIALVDQTLKGL 164
           LV  SGP R++ LV+QT + L
Sbjct: 142 LVHVSGPGRYLELVEQTAQVL 162


>RSp0874 [NU] COG1450 Type II secretory pathway, component PulD Rso
           Ralstonia solanacearum
          Length = 568

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 8/157 (5%)

Query: 1   MVLKRILYAGGFICLGMVSALGAPLSLPSAPYSYTVLDQDLSAALQEFGNNLNIRVNVST 60
           M    +L+  G +C        AP+   S  + Y    +D+   L++ G + ++  ++ST
Sbjct: 1   MAAALLLWTAGTVC-------AAPIPWQSQKFEYVADRKDIKEVLRDLGASQHVMTSIST 53

Query: 61  EVKGRIRGRMPDLPPREFLERLTNLYNLQWYYDGLVLYISAAHEAQSRLMVLSPISFDAF 120
           +V+G + G   + P ++FL+R+   +   WYYDG VL +++A+EAQS  + L+  S    
Sbjct: 54  QVEGSVTGSFNETP-QKFLDRMAGTFGFAWYYDGAVLRVTSANEAQSATIALTRASTAQV 112

Query: 121 KTALDALNISDERYIVKPAPGDGLVLASGPPRFIALV 157
           K AL  + I+D R+ ++     G ++ SGPPR + LV
Sbjct: 113 KRALTRMGIADSRFPIQYDDDSGSIVVSGPPRLVELV 149


>YPCD1.52 [NU] COG1450 Type II secretory pathway, component PulD Ype Yersinia
           pestis
          Length = 607

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 2/175 (1%)

Query: 3   LKRILYAGGFICLGMVSALGAPLSLPSAPYSYTVLDQDLSAALQEFGNNLNIRVNVSTEV 62
            KR+L  G  + L   S       LP  PY Y    + L   L +F  N +  V VS ++
Sbjct: 9   FKRVL-TGTLLLLSNYSWAQELDWLP-IPYVYVAKGESLRDLLIDFSANYDATVVVSDKI 66

Query: 63  KGRIRGRMPDLPPREFLERLTNLYNLQWYYDGLVLYISAAHEAQSRLMVLSPISFDAFKT 122
             ++ G+     P++FL+ + +LYNL WYYDG VLYI    E  SRL+ L        K 
Sbjct: 67  NDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKL 126

Query: 123 ALDALNISDERYIVKPAPGDGLVLASGPPRFIALVDQTLKGLVAEAQARRNPAAA 177
           AL    I + R+  +P   + LV  SGPPR++ LV+QT   L  + Q R     A
Sbjct: 127 ALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGA 181


>ZescC [NU] COG1450 Type II secretory pathway, component PulD EcZ
           Escherichia coli O157:H7 EDL933
          Length = 512

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 12  FICLGMVSALGAPLSLPS----APYSYTVLDQDLSAALQEFGNNLNIRVNVSTEVKGRIR 67
           F  L   SA  AP SL      + Y        + A L +F  N +I V +S+ V     
Sbjct: 9   FTALFCCSAQAAPSSLEKRLGKSEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFS 68

Query: 68  GRMPDLPPREFLERLTNLYNLQWYYDGLVLYISAAHEAQSRLMVLSPISFDA-FKTALDA 126
           G + +  P + LE+L+ LY+L WYYD  +LYI   +E    ++  + +  D+  K   D 
Sbjct: 69  GEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDT 128

Query: 127 LNISDERYIVKPAPGDGLVLASGPPRFIALVDQTLKGLVAEAQAR 171
           ++++     V+       +   G P  I  +    + L  EAQ++
Sbjct: 129 ISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK 173