BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0023.p         (233 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6344 [NU] COG1886 Flagellar motor switch/type III secretory p...   261   6e-70

>mlr6344 [NU] COG1886 Flagellar motor switch/type III secretory pathway
           protein Mlo Mesorhizobium loti
          Length = 354

 Score =  261 bits (668), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 132/232 (56%), Positives = 169/232 (72%), Gaps = 2/232 (0%)

Query: 2   QRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLPR 61
           Q N+QL+R  EAA   PYLE D+ +G ++ K RL LFS LD LVP AF  LGEL G+LPR
Sbjct: 125 QLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFLFSPLDGLVPSAFRALGELFGQLPR 184

Query: 62  QTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPAK 121
           Q   L S+LP++VAG++G+L +   ++R+A  GDALLPD  P  RG++ L+   LWA A 
Sbjct: 185 QPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLWASAD 244

Query: 122 IAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGTL 181
           + G++LVL GPFR +S+ L++ HM TQ  +Q  P+E D+D +EI LVFECGRWP+ +G L
Sbjct: 245 LEGDQLVLHGPFRPRSYSLENAHM-TQLGSQLGPTE-DLDDVEIMLVFECGRWPIPLGEL 302

Query: 182 RSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 233
           RS  EGH+FELGR +  PVDILANGQ IGRGDIVRIG+ L +RLRGRL  ND
Sbjct: 303 RSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND 354