BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0020.p (273 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr6345 [U] COG4791 Type III secretory pathway, component EscT M... 316 4e-86 YPCD1.46 [U] COG4791 Type III secretory pathway, component EscT ... 105 1e-22 PA1691 [U] COG4791 Type III secretory pathway, component EscT Pa... 91 3e-18 ZescT [U] COG4791 Type III secretory pathway, component EscT EcZ... 80 7e-15 ECs4581 [U] COG4791 Type III secretory pathway, component EscT E... 80 7e-15 >mlr6345 [U] COG4791 Type III secretory pathway, component EscT Mlo Mesorhizobium loti Length = 272 Score = 316 bits (809), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 155/269 (57%), Positives = 193/269 (71%) Query: 5 SPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLPQ 64 SP + L+ IEL A GL AARA+GIM++LPVFTR + GLIRG L + GLPCL Sbjct: 4 SPAEIQILMHTAIELVVAAGLGAARAIGIMMILPVFTRSQTDGLIRGCLAVGFGLPCLAH 63 Query: 65 IKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVA 124 + L+ALDP TRL+ VA+LGLKEV VG LLG L IPLW +QA G+ ID QRG+++ A Sbjct: 64 VSDALQALDPETRLIEVALLGLKEVLVGALLGTFLGIPLWGLQAAGEFIDNQRGVTNPSA 123 Query: 125 AEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGAM 184 DPAT+SQAS G+FLG+TA+ IFV GGL+T++ +LYGSYLIWPVY+F P ++ QGAM Sbjct: 124 PTDPATNSQASAMGVFLGITAIAIFVASGGLETLIGALYGSYLIWPVYKFYPTLSTQGAM 183 Query: 185 ECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIMV 244 E L LLD IM T LLV+GPV+ + LIDVS M+L RFA Q KL LSP IKN+ F ++MV Sbjct: 184 EVLGLLDQIMRTALLVSGPVVFFMTLIDVSFMLLRRFAPQFKLTQLSPAIKNLVFPILMV 243 Query: 245 SYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 +Y YL+E EI +N LE F +LLK Sbjct: 244 TYAGYLVEGMKLEITQANGALEWFDRLLK 272 >YPCD1.46 [U] COG4791 Type III secretory pathway, component EscT Ype Yersinia pestis Length = 261 Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 9/232 (3%) Query: 31 LGIMLVLPVFTRPRISG-LIRGSLTIAIGLPCLPQIKLGLEALDPNTRLVSVAMLGL--K 87 + ++LPV ++ + G L+R + ++ L P + A P + + ++ L K Sbjct: 21 MACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAV-----ANQPYIEVDAFTLMLLIGK 75 Query: 88 EVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVAAEDPATHSQASGTGLFLGVTAVT 147 E+ +GLL+G + +IP W++++ G I+D QRG ++ + +P SQ S TGL L T +T Sbjct: 76 EIILGLLIGFVATIPFWALESAGFIVDNQRG-AAMASLLNPGLDSQTSPTGLLLTQTLIT 134 Query: 148 IFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGAMECLALLDHIMLTTLLVAGPVLAL 207 IF G +++S+L+ SY+ WPV F PAV+ Q I+L ++A P+L Sbjct: 135 IFFSGGAFLSLLSALFHSYVNWPVASFFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIA 194 Query: 208 LLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIMVSYTVYLLEYAGAEIL 259 + L + + ++ RFA L + L+ IK+ +++V Y + ++ +A +L Sbjct: 195 MFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246 >PA1691 [U] COG4791 Type III secretory pathway, component EscT Pae Pseudomonas aeruginosa Length = 262 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 131/246 (53%), Gaps = 5/246 (2%) Query: 29 RALGIMLVLPVFTRPRISG-LIRGSLTIAIGLPCLPQIKLGLEALDPNTRLVSVAMLGLK 87 R + +VLPV + + G L+R + ++ L P + +L P + +A+L K Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVA---GSLPPALGALDIALLIGK 75 Query: 88 EVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVAAEDPATHSQASGTGLFLGVTAVT 147 EV +GLL+G + +IP W+++A G IID QRG ++ + +P+ SQ S TGL L T +T Sbjct: 76 EVLLGLLIGFVATIPFWAMEATGFIIDNQRG-AALASTFNPSLGSQTSPTGLLLTQTLIT 134 Query: 148 IFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGAMECLALLDHIMLTTLLVAGPVLAL 207 +F G +V SL+ SY WPV F P + +Q A +++ L A P+L Sbjct: 135 LFFSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIA 194 Query: 208 LLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIMVSYTVYLLEYAGAEILTSNNVLEH 267 + L + + ++ RFA L + L+ IK++ +++V Y L+E+A +L + + L Sbjct: 195 MFLAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLAVDPLRL 254 Query: 268 FKKLLK 273 + +L+ Sbjct: 255 LRPVLE 260 >ZescT [U] COG4791 Type III secretory pathway, component EscT EcZ Escherichia coli O157:H7 EDL933 Length = 258 Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 111/212 (52%), Gaps = 11/212 (5%) Query: 29 RALGIMLVLPVF-TRPRISGLIRGSLTIAIGLPCLPQIKLGLEALDPNTRLVSVAMLGLK 87 R LG+ ++LP+F T +S IR S+ IA LP + + E L + + + + LK Sbjct: 17 RPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPIIVENYTFSEKLP--SGIFQLTGIALK 74 Query: 88 EVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVAAEDPATHSQASGTGLFLGVTAVT 147 E+ +G +G+ +I W+I A G IIDT RG S+ + +P+ +S TG+ L Sbjct: 75 EISIGFFIGLSFTILFWAIDAAGQIIDTLRG-STISSIFNPSISDSSSITGVILYQFISV 133 Query: 148 IFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTA--QGAMECL-ALLDHIMLTTLLVAGPV 204 IFV+ GG+Q+++ LY SY I P L A A + ++ L +L D + L + P+ Sbjct: 134 IFVIHGGIQSILDKLYLSYEILP----LQADIAFNRALIDFLFSLWDSFIKLMLSFSVPM 189 Query: 205 LALLLLIDVSVMMLGRFASQLKLNDLSPTIKN 236 + + L D+ L + A QL + LS +K+ Sbjct: 190 IIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKS 221 >ECs4581 [U] COG4791 Type III secretory pathway, component EscT Ecs Escherichia coli O157:H7 Length = 258 Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 111/212 (52%), Gaps = 11/212 (5%) Query: 29 RALGIMLVLPVF-TRPRISGLIRGSLTIAIGLPCLPQIKLGLEALDPNTRLVSVAMLGLK 87 R LG+ ++LP+F T +S IR S+ IA LP + + E L + + + + LK Sbjct: 17 RPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPIIVENYTFSEKLP--SGIFQLTGIALK 74 Query: 88 EVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVAAEDPATHSQASGTGLFLGVTAVT 147 E+ +G +G+ +I W+I A G IIDT RG S+ + +P+ +S TG+ L Sbjct: 75 EISIGFFIGLSFTILFWAIDAAGQIIDTLRG-STISSIFNPSISDSSSITGVILYQFISV 133 Query: 148 IFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTA--QGAMECL-ALLDHIMLTTLLVAGPV 204 IFV+ GG+Q+++ LY SY I P L A A + ++ L +L D + L + P+ Sbjct: 134 IFVIHGGIQSILDKLYLSYEILP----LQADIAFNRALIDFLFSLWDSFIKLMLSFSVPM 189 Query: 205 LALLLLIDVSVMMLGRFASQLKLNDLSPTIKN 236 + + L D+ L + A QL + LS +K+ Sbjct: 190 IIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKS 221