BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0019.p         (202 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6346 Non COG                                                       217   2e-56
YPCD1.47 [U] COG4792 Type III secretory pathway, component EscU ...    89   9e-18
BS_flhB [NU] COG1377 Flagellar biosynthesis pathway, component F...    87   3e-17
STM1422 [U] COG4792 Type III secretory pathway, component EscU S...    79   6e-15
BH2439 [NU] COG1377 Flagellar biosynthesis pathway, component Fl...    75   1e-13

>mlr6346 Non COG
          Length = 345

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 129/188 (68%)

Query: 1   MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60
           MS +SEEK    TPKKL DARKKGQ   S+D V  V  CAGL  LW R  AIEDK  E +
Sbjct: 1   MSDSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYLWLRGSAIEDKCREAL 60

Query: 61  RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120
             +DKLQ  PF  AV QAL  L EL++ATVGPLL   VAA LLA++LANGGF+ +LEP+ 
Sbjct: 61  LFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVLLASILANGGFVFSLEPMT 120

Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180
           P  +K++P +GL R+AS RS +ELGKTL KV +LG  F F +   WK +VYLP CGMGC 
Sbjct: 121 PNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMVYLPFCGMGCL 180

Query: 181 GLVFTEVK 188
           GLV T  K
Sbjct: 181 GLVVTGAK 188


>YPCD1.47 [U] COG4792 Type III secretory pathway, component EscU Ype Yersinia
           pestis
          Length = 354

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 8/206 (3%)

Query: 1   MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60
           MSG   EK   PTPKK+RDARKKGQ A+S ++VS     A  + L   +    + + + +
Sbjct: 1   MSG---EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM 57

Query: 61  RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120
            +  +    PF+ A+   +  +L        PLL  A   A+ ++V+   GF+I+ E +K
Sbjct: 58  LIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVV-QYGFLISGEAIK 116

Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGC- 179
           P ++K++PI+G  RI S +S +E  K+++KVVLL    +  +  +   L+ LP CG+ C 
Sbjct: 117 PDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECI 176

Query: 180 ---FGLVFTEVKLLAGIAGGGLSSAD 202
               G +  ++ ++  +    +S AD
Sbjct: 177 TPLLGQILRQLMVICTVGFVVISIAD 202


>BS_flhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Bsu
           Bacillus subtilis
          Length = 360

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 7/173 (4%)

Query: 7   EKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETVRLIDKL 66
           EK    TPKK +D RKKGQ A+S+D+ + VS       L      + D+    +  I+  
Sbjct: 13  EKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRL---LSFIETF 69

Query: 67  QEQPFTSAVPQALSGLLELSI-ATVGPLLAAAVAAALLANVLANG---GFMIALEPLKPK 122
             +  T  + ++    L +S+   +G +LA  +  AL+A V++N    GF+ + E ++PK
Sbjct: 70  YTESLTMKLSESNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPK 129

Query: 123 LEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVC 175
           LEKLDPIKG  RI S R+ +EL K+++K+V++G   F  +   +  ++ LP+ 
Sbjct: 130 LEKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLL 182


>STM1422 [U] COG4792 Type III secretory pathway, component EscU Sty
           Salmonella typhimurium LT2
          Length = 352

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 7   EKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETVRLIDKL 66
           EK   PT KKLRD RK+GQ  +S ++ S     A      +    +     E++    +L
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 67  QEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLKPKLEKL 126
             +PF+ A+ Q    L+E S+ +    L A V  A + +V    G +IA + +  K E +
Sbjct: 63  VNKPFSYALTQLSHALIE-SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI 121

Query: 127 DPIKGLTRIASKRSAIELGKTLVKVVLLGTC---FFFTVTASWKALVYLPVCGMGC 179
           +P+    +I S  S +EL K+ +KV++L      FF+   ++++A   LP CG+ C
Sbjct: 122 NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRA---LPYCGLAC 174


>BH2439 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Bha
           Bacillus halodurans
          Length = 363

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 6/159 (3%)

Query: 5   SEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETVRLID 64
           ++EK    TPKK +D+RKKGQ A+S D+ + +        LW   G +     E + LI 
Sbjct: 13  AQEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLCVFLFLWLFGGPLLGGTLEKL-LIH 71

Query: 65  KLQEQPFTSAVPQALSGLL-ELSIA---TVGPLLAAAVAAALLANVLANGGFMIALEPLK 120
             +         ++++ L+ E+++     + P++A A+ A +LA+ +  G  +   EPLK
Sbjct: 72  TFESYLLMDVTEESVAELMFEITMEAAIVLLPIMAIALIAGVLASYIQVGP-LFTTEPLK 130

Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFF 159
            KL K+DPIKG  RI S R+ +E  K+L+K+VL G   F
Sbjct: 131 MKLSKIDPIKGAKRIFSVRALVEFLKSLLKIVLTGLAAF 169