BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0016.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr6334 [TK] COG0745 Response regulators consisting of a CheY-li... 330 2e-90 AGpAbx228 [TK] COG0745 Response regulators consisting of a CheY-... 169 4e-42 AGc4608 [TK] COG0745 Response regulators consisting of a CheY-li... 169 5e-42 BMEII1014 [TK] COG0745 Response regulators consisting of a CheY-... 161 9e-40 SMb21210 [TK] COG0745 Response regulators consisting of a CheY-l... 154 1e-37 >mlr6334 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 223 Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 160/221 (72%), Positives = 183/221 (82%) Query: 1 MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60 MR L VDHHAD RAV AL GFAVDV TL++A++A CA+Y ILLLELVLPDGDGL Sbjct: 1 MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGL 60 Query: 61 DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120 DWLKQLR EG S+PA+++S ++DL +RIAIFN GADDFL KPV T ELIARMRA+LRRST Sbjct: 61 DWLKQLRGEGHSVPALILSDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRST 120 Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180 QMTAP++ FGNLHFDPI RQV+V G L +ARRE+CILEHLLNRAGR VPR+ LED LY+ Sbjct: 121 QMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEHLLNRAGRIVPRSQLEDHLYS 180 Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLE 221 F+DEVS NALEVGIYRLR +LS S AT RIKT RG+GY LE Sbjct: 181 FNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILE 221 >AGpAbx228 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 224 Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 136/220 (61%) Query: 1 MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60 M++LL++ + A+K AL G +D L A A+ A+Y I+L++ LPDGDG Sbjct: 1 MKLLLIEDDPEMTDALKVALSQHGIVLDAVGDLATAREAIIMADYDIVLIDRQLPDGDGS 60 Query: 61 DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120 +L LRR G + +I++S+L RI+ N GADD+LPKP EL+ARM A+LRR+ Sbjct: 61 TFLADLRRAGSNTRSIIISALRSTDERISGLNDGADDYLPKPFEIPELVARMSAVLRRAP 120 Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180 +++ GN+ +D ++ V V G L + RRE+ I+E LL GRTV R+SLE +Y+ Sbjct: 121 TTGPFVLSAGNVTYDRVSCDVHVNGIRLALTRRELLIIETLLRNRGRTVLRSSLEGQVYS 180 Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTL 220 FDDE+ +N+LE + RLR L ++ A + IK RG+GY L Sbjct: 181 FDDEIQSNSLESNMSRLRRKLGEAEADIVIKNIRGIGYYL 220 >AGc4608 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 224 Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 139/222 (62%) Query: 1 MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60 MRILL++ + ARA+ EAL D T+ +A A +Y +L+L+ LPDG+GL Sbjct: 1 MRILLLEDEPEMARALLEALRRRDVLADHVSTISDADALARDGSYDVLVLDRRLPDGEGL 60 Query: 61 DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120 + + LRR S+P +++++L ++ R+ +AGADD+L KP + EEL+AR+RA+ RR Sbjct: 61 NLVASLRRSKNSVPILVLTALGNVDHRVDGLDAGADDYLAKPFAIEELLARLRALHRRGP 120 Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180 + FGNL DP + +V+V G +++ RRE +LE L+ R R V R+SL +++Y Sbjct: 121 SLADKYTRFGNLGIDPRSNEVSVAGSSIELRRREYLVLEALMRRPNRIVTRSSLIEAVYT 180 Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLEL 222 DDE+ +NAL+ I R+R L+Q+ AT+ I+ R +GY + L Sbjct: 181 LDDEIESNALDAHISRIRKKLAQAEATVEIRAVRNIGYLVRL 222 >BMEII1014 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 225 Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 1 MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60 MRI+L++ AV++ + G VD LD A ++ A Y ++LL+L+LPDG GL Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQGL 60 Query: 61 DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120 +L+ LR +G S P I++++L+ + RI NAGADD+L KP EL AR+ A+ RR + Sbjct: 61 SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120 Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180 PL+ G L D A+ V GR L + RE +LE L G+T+ +A LE+ LY+ Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180 Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTL 220 FD EV +N +EV + RLR L + I+T RG+GY L Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA----IIETVRGIGYRL 216 >SMb21210 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 223 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 131/223 (58%) Query: 1 MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60 MR+LLV+ + E + G+ +D TL +A AA+ + ++LL+L LPDGDGL Sbjct: 1 MRLLLVEDSPRLTELINETMHDAGWRLDGVSTLRDAEAAIAAREHDLVLLDLGLPDGDGL 60 Query: 61 DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120 L+ +RRE +P +++++ + RIA +AGADD+L KP EL++R RA+LRR+ Sbjct: 61 QLLQWIRREHVGLPVLIITARGSVDERIAGLDAGADDYLVKPFHHRELLSRCRAMLRRNP 120 Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180 P++ G L +DP ++ G +L + RE ++E LL GR VP+ LE +L Sbjct: 121 NAIQPVLEAGALRYDPATAELTCEGAVLPLPPRERSLIEILLREVGRVVPKRRLETALSE 180 Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELI 223 + E+S+NALE+ + R+R L ++I+T RG+GY L + Sbjct: 181 YGQELSSNALELAVSRVRKRLQSVETGVQIETVRGIGYLLRTV 223