BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0096.p (512 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport... 150 6e-36 PA1072 [E] COG4177 ABC-type branched-chain amino acid transport ... 149 1e-35 livM [E] COG4177 ABC-type branched-chain amino acid transport sy... 142 2e-33 STM3562 [E] COG4177 ABC-type branched-chain amino acid transport... 142 2e-33 ZlivM [E] COG4177 ABC-type branched-chain amino acid transport s... 142 2e-33 >YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ype Yersinia pestis Length = 428 Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 155/293 (52%), Gaps = 25/293 (8%) Query: 32 VATISLTAIAC-IGLNVLLGLAGQISLGHIGFMAIGAYTTVLLMEKAGWPYLAATAAAIA 90 +AT++L + +GLNV++GL+G + LG+ GF AIGAYT LL G + + A Sbjct: 114 IATLTLIYVMLGLGLNVVVGLSGLLVLGYGGFYAIGAYTYALLNHYYGLGFWESLPLAGI 173 Query: 91 LVSVVGGLLAMPALRVRGPYLAMVTIAFGFIVEHGTIEWRDLTGGGNGLILTAPPEVFGF 150 ++ G LL P LR+RG YLA+VT+ FG IV + ++TGG NG+ P +FG Sbjct: 174 TAALSGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGL 233 Query: 151 PLSER------------------------HLAIAGIVLVFAGLILFERLKRSGWGYAMRA 186 S L + ++LV L + RL R G A A Sbjct: 234 EFSRTAKDGGWDTFHNFFGLTYDPSHRIIFLYLVALLLVILTLFVINRLLRMPLGRAWEA 293 Query: 187 ARDTEVATRSIGIDLVRVRTVAFIISAAAMALAGALFAPLQGYISPSSFPFLQSILLLFG 246 R+ E+A RS+G+ +++ AF ISAA AG LFA QG++SP SF F++S +L Sbjct: 294 LREDEIACRSLGLSPTKIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFVESAFVLAI 353 Query: 247 VMVGGAGSALGPVIGAALVVLLPEMLSDLAEYRLLAFGVLLFAVLRVAPSGIM 299 V++GG GS ++ A L+V+ E++ DL Y +L G L+ ++ P G++ Sbjct: 354 VVLGGMGSQFAVILAAVLLVVSRELMRDLNAYSMLLLGALMVLMMIWRPQGLL 406 >PA1072 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 417 Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 158/298 (53%), Gaps = 25/298 (8%) Query: 26 SYGVFLVATISLTAIAC-IGLNVLLGLAGQISLGHIGFMAIGAYTTVLLMEKAGWPYLAA 84 S G +AT+ L + IGLN+++GLAG + LG++GF A+GAYT LL E AG+ + A Sbjct: 110 SRGAVDIATLILIYVMLGIGLNIVVGLAGLLDLGYVGFYAVGAYTYALLAEYAGFGFWTA 169 Query: 85 TAAAIALVSVVGGLLAMPALRVRGPYLAMVTIAFGFIVEHGTIEWRDLTGGGNGLILTAP 144 A + ++ G LL P LR+RG YLA+VT+ FG I+ ++TGG NG+ Sbjct: 170 LPIAGMMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTEITGGPNGIGSIPK 229 Query: 145 PEVFGFPLSERHLAIAGIVLVFAGL-----------------------ILFERLKRSGWG 181 P +FG R F G+ + RL R G Sbjct: 230 PTLFGLTFERRAPEGMQTFHEFFGIAYNTNYKVILLYVVALLLVLLALFVINRLMRMPIG 289 Query: 182 YAMRAARDTEVATRSIGIDLVRVRTVAFIISAAAMALAGALFAPLQGYISPSSFPFLQSI 241 A A R+ EVA R++G++ V+ AF I A+ AG+ FA QG ++P SF F++S Sbjct: 290 RAWEALREDEVACRALGLNPTIVKLSAFTIGASFAGFAGSFFAARQGLVTPESFTFIESA 349 Query: 242 LLLFGVMVGGAGSALGPVIGAALVVLLPEMLSDLAEYRLLAFGVLLFAVLRVAPSGIM 299 ++L V++GG GS LG ++ A ++VLL EM EYR+L FG+ + ++ P G++ Sbjct: 350 MILAIVVLGGMGSQLGVILAAVVMVLLQEM-RGFNEYRMLIFGLTMIVMMIWRPQGLL 406 >livM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Eco Escherichia coli K12 Length = 425 Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 154/299 (51%), Gaps = 25/299 (8%) Query: 26 SYGVFLVATISLTAIAC-IGLNVLLGLAGQISLGHIGFMAIGAYTTVLLMEKAGWPYLAA 84 S G +AT+++ I +GLNV++GL+G + LG+ GF AIGAYT LL G + Sbjct: 108 SRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTC 167 Query: 85 TAAAIALVSVVGGLLAMPALRVRGPYLAMVTIAFGFIVEHGTIEWRDLTGGGNGLILTAP 144 A + + G LL P LR+RG YLA+VT+ FG IV + ++TGG NG+ Sbjct: 168 LPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPK 227 Query: 145 PEVFGFPLS--------ERHLAIAGIVLVFAGLILF----------------ERLKRSGW 180 P +FG S + G+ + ++F RL R Sbjct: 228 PTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPL 287 Query: 181 GYAMRAARDTEVATRSIGIDLVRVRTVAFIISAAAMALAGALFAPLQGYISPSSFPFLQS 240 G A A R+ E+A RS+G+ R++ AF ISAA AG LFA QG++SP SF F +S Sbjct: 288 GRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAES 347 Query: 241 ILLLFGVMVGGAGSALGPVIGAALVVLLPEMLSDLAEYRLLAFGVLLFAVLRVAPSGIM 299 +L V++GG GS ++ A L+V+ E++ D EY +L G L+ ++ P G++ Sbjct: 348 AFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLL 406 >STM3562 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 425 Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 25/293 (8%) Query: 32 VATISLTAIAC-IGLNVLLGLAGQISLGHIGFMAIGAYTTVLLMEKAGWPYLAATAAAIA 90 +AT+++ I +GLNV++GL+G + LG+ GF AIGAYT LL G + A Sbjct: 114 IATMTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGL 173 Query: 91 LVSVVGGLLAMPALRVRGPYLAMVTIAFGFIVEHGTIEWRDLTGGGNGLILTAPPEVFGF 150 + + G LL P LR+RG YLA+VT+ FG IV + ++TGG NG+ P +FG Sbjct: 174 VSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGL 233 Query: 151 PLS--------ERHLAIAGIVLVFAGLILF----------------ERLKRSGWGYAMRA 186 S + G+ + ++F RL R G A A Sbjct: 234 EFSRSTREGGWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEA 293 Query: 187 ARDTEVATRSIGIDLVRVRTVAFIISAAAMALAGALFAPLQGYISPSSFPFLQSILLLFG 246 R+ E+A RS+G+ R++ AF ISAA AG LFA QG++SP SF F +S +L Sbjct: 294 LREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAI 353 Query: 247 VMVGGAGSALGPVIGAALVVLLPEMLSDLAEYRLLAFGVLLFAVLRVAPSGIM 299 V++GG GS ++ A L+V+ E++ D EY +L G L+ ++ P G++ Sbjct: 354 VVLGGMGSQFAVILAAVLLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLL 406 >ZlivM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 425 Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 153/299 (51%), Gaps = 25/299 (8%) Query: 26 SYGVFLVATISLTAIAC-IGLNVLLGLAGQISLGHIGFMAIGAYTTVLLMEKAGWPYLAA 84 S G +AT+++ I +GLNV++GL+G + LG+ GF AIGAYT LL G + Sbjct: 108 SRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTC 167 Query: 85 TAAAIALVSVVGGLLAMPALRVRGPYLAMVTIAFGFIVEHGTIEWRDLTGGGNGLILTAP 144 A + + G LL P LR+RG YLA+VT+ FG IV + ++TGG NG+ Sbjct: 168 LPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPK 227 Query: 145 PEVFGFPLS--------ERHLAIAGIVLVFAGLILF----------------ERLKRSGW 180 P FG S + G+ + ++F RL R Sbjct: 228 PTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPL 287 Query: 181 GYAMRAARDTEVATRSIGIDLVRVRTVAFIISAAAMALAGALFAPLQGYISPSSFPFLQS 240 G A A R+ E+A RS+G+ R++ AF ISAA AG LFA QG++SP SF F +S Sbjct: 288 GRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAES 347 Query: 241 ILLLFGVMVGGAGSALGPVIGAALVVLLPEMLSDLAEYRLLAFGVLLFAVLRVAPSGIM 299 +L V++GG GS ++ A L+V+ E++ D EY +L G L+ ++ P G++ Sbjct: 348 AFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLL 406