BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0093.p         (108 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR1034 [E] COG0410 ABC-type branched-chain amino acid transport ...   102   3e-22
livF [E] COG0410 ABC-type branched-chain amino acid transport sy...   101   4e-22
ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s...   101   4e-22
ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport...   101   4e-22
STM3560 [E] COG0410 ABC-type branched-chain amino acid transport...   101   5e-22

>DR1034 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 252

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 71/95 (74%), Gaps = 1/95 (1%)

Query: 1   MLAVARGLLTAPKVFMLDEPSLGLAPLVVDELFASFEQLRVE-GMTLIVVDQMAGQALAL 59
           MLA+AR L+ APKV +LDEPS+GL+PL V+ +F+  E+L  E G T+++V+Q A  ALA+
Sbjct: 158 MLAIARALMIAPKVLLLDEPSMGLSPLFVENIFSIIERLNKERGTTILLVEQNASMALAI 217

Query: 60  ADRAYLLETGAILKSGAAEIIAEDPSLEAAYLGGE 94
           ADRAY+L+TG I  SG A+ IA D ++  AYLG E
Sbjct: 218 ADRAYVLQTGEIKLSGNAQDIARDETVRKAYLGDE 252


>livF [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Eco Escherichia coli K12
          Length = 241

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 69/93 (74%)

Query: 1   MLAVARGLLTAPKVFMLDEPSLGLAPLVVDELFASFEQLRVEGMTLIVVDQMAGQALALA 60
           MLA+ R L++ P++ +LDEPSLGLAP+++ ++F + EQLR +GMT+ +V+Q A QAL LA
Sbjct: 149 MLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 208

Query: 61  DRAYLLETGAILKSGAAEIIAEDPSLEAAYLGG 93
           DR Y+LE G ++ S   + +  + ++ +AYLGG
Sbjct: 209 DRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 241


>ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component EcZ Escherichia coli O157:H7 EDL933
          Length = 241

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 69/93 (74%)

Query: 1   MLAVARGLLTAPKVFMLDEPSLGLAPLVVDELFASFEQLRVEGMTLIVVDQMAGQALALA 60
           MLA+ R L++ P++ +LDEPSLGLAP+++ ++F + EQLR +GMT+ +V+Q A QAL LA
Sbjct: 149 MLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 208

Query: 61  DRAYLLETGAILKSGAAEIIAEDPSLEAAYLGG 93
           DR Y+LE G ++ S   + +  + ++ +AYLGG
Sbjct: 209 DRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 241


>ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Ecs Escherichia coli O157:H7
          Length = 241

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 69/93 (74%)

Query: 1   MLAVARGLLTAPKVFMLDEPSLGLAPLVVDELFASFEQLRVEGMTLIVVDQMAGQALALA 60
           MLA+ R L++ P++ +LDEPSLGLAP+++ ++F + EQLR +GMT+ +V+Q A QAL LA
Sbjct: 149 MLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 208

Query: 61  DRAYLLETGAILKSGAAEIIAEDPSLEAAYLGG 93
           DR Y+LE G ++ S   + +  + ++ +AYLGG
Sbjct: 209 DRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 241


>STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Sty Salmonella typhimurium LT2
          Length = 237

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 69/93 (74%)

Query: 1   MLAVARGLLTAPKVFMLDEPSLGLAPLVVDELFASFEQLRVEGMTLIVVDQMAGQALALA 60
           MLA+ R L++ P++ +LDEPSLGLAP+++ ++F + EQLR +GMT+ +V+Q A QAL LA
Sbjct: 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 204

Query: 61  DRAYLLETGAILKSGAAEIIAEDPSLEAAYLGG 93
           DR Y+LE G ++ S   + +  + ++ +AYLGG
Sbjct: 205 DRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 237