BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0084.p (278 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr4968 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 286 3e-77 TM0112 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 147 3e-35 BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 140 4e-33 L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 135 1e-31 BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 134 2e-31 >mlr4968 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 348 Score = 286 bits (733), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/259 (56%), Positives = 196/259 (75%) Query: 1 MMKKELGLFLLLAVISAITGAINPAFLSFVNLLNMANLIGLFGVFALGEGLVIITGGIDL 60 M KK+LGL +L+ V+ AI INP FL +NL N +NLIGLFG+ ++G+ VIITGGI+L Sbjct: 18 MSKKDLGLLILILVVGAIVAIINPRFLLPINLANTSNLIGLFGILSIGQAFVIITGGIEL 77 Query: 61 SLGSMFALLGVIFIDLLTTYHVPWPLALLLVLMGGLALGGIQGFLITRLKMQPFIVTLCG 120 S+GS+ ALLG +FID + + WPLA +L++ G +G + G+LITRLK+QPF+VTLCG Sbjct: 78 SVGSVVALLGTLFIDFIAVRELDWPLAFVLIIALGAIIGLVHGWLITRLKLQPFVVTLCG 137 Query: 121 LLIYRGAARYYTSDSTRGFGYGDEASTLSSIASGNIAGIPNTFIFLIILALILGVLLHRS 180 LLIYRG AR+YT+D T GF +G L + +G G+PN+FI LI++A+++ V+LHRS Sbjct: 138 LLIYRGVARFYTADGTAGFAFGQNFPELEFLTAGRSYGVPNSFIALIVIAIVMWVVLHRS 197 Query: 181 VYGRWLYAVGKNEEAARFSGIKTNLVIATAYVISGGLAGVSTVMFVFYTNSVSPSSFGNF 240 V+GR+LYA+GKNEEAA++SGI+T ++ AYVI G L +S + F YT S+SP+S G F Sbjct: 198 VFGRYLYAIGKNEEAAKYSGIRTGRIVMAAYVICGVLTALSAIYFAMYTRSISPASHGQF 257 Query: 241 YELYAIAAAVLGGCSLRGG 259 YELYAIAAAVLGG SLRGG Sbjct: 258 YELYAIAAAVLGGFSLRGG 276 >TM0112 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Tma Thermotoga maritima Length = 317 Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 147/258 (56%), Gaps = 8/258 (3%) Query: 4 KELGLFLLLAVISAITGAINPAFLSFVNLLNMANLIGLFGVFALGEGLVIITGG--IDLS 61 +ELG + L ++ T +NP FL+ NL + I +FG+ A+GE VII+GG IDLS Sbjct: 11 RELGPLVALVSLAVFTAILNPRFLTAFNLQALGRQIAIFGLLAIGETFVIISGGGAIDLS 70 Query: 62 LGSMFALLGVIFIDLLTTYHVPWPLALLLVLMGGLALGGIQGFLITRLKMQPFIVTLCGL 121 GSM AL GV+ + L T+ VP ++++L+L+ + G G +T+L++ FI+TL L Sbjct: 71 PGSMVALTGVM-VAWLMTHGVPVWISVILILLFSIGAGAWHGLFVTKLRVPAFIITLGTL 129 Query: 122 LIYRGAARYYTSDSTRGFGYGDEASTLSSIASGNIAGIPNTFIFLIILALILGVLLHRSV 181 I RG A T +G+ S+ I G IP L+ +AL+ L ++V Sbjct: 130 TIARGMAAVIT----KGWPIIGLPSSFLKIGQGEFLKIPIPVWILLAVALVADFFLRKTV 185 Query: 182 YGRWLYAVGKNEEAARFSGIKTNLVIATAYVISGGLAGVSTVMFVFYTNSVSPSSFGNFY 241 YG+ L A G NE AARFSG+ + V A+++SG LAGV ++ + P G+ Y Sbjct: 186 YGKHLRASGGNEVAARFSGVNVDRVRMIAFMVSGFLAGVVGIIIAARLSQGQP-GVGSMY 244 Query: 242 ELYAIAAAVLGGCSLRGG 259 ELYAIA+ V+GG SL GG Sbjct: 245 ELYAIASTVIGGTSLTGG 262 >BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bsu Bacillus subtilis Length = 322 Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/259 (38%), Positives = 148/259 (57%), Gaps = 10/259 (3%) Query: 4 KELGLFLLLAVISAITGAINPAFLSFVNLLNMANLIGLFGVFALGEGLVIITGGIDLSLG 63 ++LG FL L ++ I +NP+FL +N+LN+ + + G+ A G VI+TGGIDLS+G Sbjct: 20 QKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVG 79 Query: 64 SMFALLGVIFIDLLTTYHVPWPLALLLVLMGGLALGGIQGFLITRLKMQPFIVTLCGLLI 123 ++ AL + ++ + P LA++L + G LG I G LIT+ KM PFI TL + + Sbjct: 80 AILALSSALVAGMIVSGVDPV-LAIILGCIIGAVLGMINGLLITKGKMAPFIATLATMTV 138 Query: 124 YRGAARYYTS-DSTRGFG--YGDEASTLSSIASGNIAGIPNTFIFLIILALILGVLLHRS 180 +RG YT + G G YG + G GIP I +++ +IL VLLH++ Sbjct: 139 FRGLTLVYTDGNPITGLGTNYGFQM-----FGRGYFLGIPVPAITMVLAFVILWVLLHKT 193 Query: 181 VYGRWLYAVGKNEEAARFSGIKTNLVIATAYVISGGLAGVSTVMFVFYTNSVSPSSFGNF 240 +GR YA+G NE+AA SGIK V Y ++G L+ ++ + +S P++ G Sbjct: 194 PFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTA-GES 252 Query: 241 YELYAIAAAVLGGCSLRGG 259 YEL AIAA VLGG SL GG Sbjct: 253 YELDAIAAVVLGGTSLSGG 271 >L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Lla Lactococcus lactis Length = 313 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 146/250 (58%), Gaps = 8/250 (3%) Query: 12 LAVISAITGAINPAFLSFVNLLNMANLIGLFGVFALGEGLVIITGGIDLSLGSMFALLGV 71 L V+ I INP F++ NLLN+ + G A G VI+T GIDLS+G++ AL Sbjct: 17 LIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSA 76 Query: 72 IFIDLLTTYHVPWPLALLLVLMGGLALGGIQGFLITRLKMQPFIVTLCGLLIYRGAARYY 131 + + +P PLA++ L+ G LG I G LI K+ PFIVTL ++YRGA + Sbjct: 77 VSAGFIAQ-GMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVF 135 Query: 132 TSDS--TRGFGYGDEASTLSSIASGNIAGIPNTFIFLIILALILGVLLHRSVYGRWLYAV 189 T + T+ + L+ I G + GIP I +I++ ++L +LLH++ +G+ +YA+ Sbjct: 136 TDGNPITKHM----DGYFLAYIGQGYLLGIPFPVILMILVFIVLWILLHKTAFGKSVYAL 191 Query: 190 GKNEEAARFSGIKTNLVIATAYVISGGLAGVSTVMFVFYTNSVSPSSFGNFYELYAIAAA 249 G NE+AA SGIK N V Y +SG ++ +S ++ +S +P + G+ YE+YAIAA Sbjct: 192 GGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQA-GSGYEMYAIAAV 250 Query: 250 VLGGCSLRGG 259 VLGG SL GG Sbjct: 251 VLGGTSLMGG 260 >BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bha Bacillus halodurans Length = 314 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 12/256 (4%) Query: 6 LGLFLLLAVISAITGAINPAFLSFVNLLNMANLIGLFGVFALGEGLVIITGGIDLSLGSM 65 +GLF ++ +IS + NP FLS N++N+ + + + A G VI+TGGIDLS+G++ Sbjct: 18 IGLFFIVLIISFL----NPDFLSLSNIMNVLRQVSINALIAFGMTFVILTGGIDLSVGAI 73 Query: 66 FALLGVIFIDLLTTYHVPWPLALLLVLMGGLALGGIQGFLITRLKMQPFIVTLCGLLIYR 125 AL + L+ P LA+L+ L+ G G I G +I++ K+ PFI TL + IYR Sbjct: 74 LALSSAVTAWLMVNSVDPI-LAVLIGLLAGTLFGAINGLVISKGKVAPFIATLATMTIYR 132 Query: 126 GAARYYTS-DSTRGFGYGDEASTL-SSIASGNIAGIPNTFIFLIILALILGVLLHRSVYG 183 G +T GF E+ST+ + G GIP + +II +IL ++L ++ +G Sbjct: 133 GLTLVFTDGRPISGF----ESSTMFEMLGRGYFFGIPVPAVTMIISFIILYLILKKTTFG 188 Query: 184 RWLYAVGKNEEAARFSGIKTNLVIATAYVISGGLAGVSTVMFVFYTNSVSPSSFGNFYEL 243 R +YAVG N+EAA SGIK + + Y ++G L+ ++ ++ S P++ G+ YEL Sbjct: 189 RRVYAVGGNQEAAILSGIKVDRIKIYVYSLTGFLSALAGMILTSRLYSAQPTA-GSMYEL 247 Query: 244 YAIAAAVLGGCSLRGG 259 AIAA VLGG SL GG Sbjct: 248 DAIAAVVLGGTSLTGG 263