BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0036.p (408 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5737_2 [T] COG0642 Signal transduction histidine kinase Mlo M... 239 1e-62 AGc3614_2 [T] COG0642 Signal transduction histidine kinase Atu A... 235 2e-61 DR1174_4 [T] COG0642 Signal transduction histidine kinase Dra De... 140 5e-33 MTH444 [T] COG0642 Signal transduction histidine kinase Mth Meth... 119 2e-26 slr0473 [T] COG4251 Bacteriophytochrome (light-regulated signal ... 118 2e-26 >mlr5737_2 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 287 Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 138/285 (48%), Positives = 180/285 (63%), Gaps = 17/285 (5%) Query: 124 NINLETIVDERTSDLREANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFKRIAT 183 N LET V ERT+DL ANEE+QRFAYIV+HDLR+PLVNIMGFTSELE Sbjct: 13 NSGLETRVRERTADLVRANEEVQRFAYIVTHDLRAPLVNIMGFTSELEA----------- 61 Query: 184 LNRAASLAPAMPEDA--TDVAEPELEGSDKQLSDDFNESLGFIKSSIAKMDRLISAILNL 241 ASL + + + ++P + + ++D E++GFI+SS KMD LI+AIL L Sbjct: 62 --GVASLQTLIEKSGIGANASDPLVANARVAAAEDLPEAIGFIRSSTRKMDGLINAILQL 119 Query: 242 TREGRREFKPERIDLRELIDGIVKTVAHQAVEANATVEVG-ALPNIVSDRLALEQIFSNL 300 +REGRR +PE I L LI+ V + HQ EA ++V A I +DRL+LEQ+F+NL Sbjct: 120 SREGRRPLRPETIQLASLIESTVSSFQHQVKEAGGKIDVDLAGVEIEADRLSLEQVFANL 179 Query: 301 IDNALKYLRNGVPGEISIEGRTKLGFAI-FEVTDNGRGIDPKDHQRIFDLFRRAGTQDKP 359 DNA KY P I + R G I + DNGRG+ +D +RIF+LFRR+G QD P Sbjct: 180 FDNATKYRSPARPLRIRVGARIIPGGRIAIDFEDNGRGVAEQDVERIFELFRRSGLQDLP 239 Query: 360 GQGIGLAHVRALVRRLGGTMSVASELHNGSTFTITLPINWSGKNR 404 G GIGLAHVRA++RRLGG ++V S+L G+TF I LP+ + R Sbjct: 240 GDGIGLAHVRAILRRLGGDITVKSKLDVGTTFRIELPLIAASNER 284 >AGc3614_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 287 Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/278 (46%), Positives = 181/278 (65%), Gaps = 21/278 (7%) Query: 124 NINLETIVDERTSDLREANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFKRIAT 183 N +LE V+ERT DLR AN+EIQRFAYIV+HDLR+PLVNIMGF SE + + + + Sbjct: 14 NRHLEERVEERTRDLRRANQEIQRFAYIVTHDLRAPLVNIMGFLSEFDTSLKPVTRYVL- 72 Query: 184 LNRAASLAPAMPEDATDVAEPELEGSDKQLSDDFNESLGFIKSSIAKMDRLISAILNLTR 243 + ++PED A +E +D E++GFI+SS KMD+LI+AIL ++R Sbjct: 73 -----ADGESLPEDVIREARLAVE-------EDIPEAIGFIRSSTRKMDQLINAILKISR 120 Query: 244 EGRREFKPERIDLRELIDGIVKTVAHQAVEANATVEVGALP-NIVSDRLALEQIFSNLID 302 +G+R+ +PE++D+ L+ + +TV HQ +EV IV+DR++L+QI NL D Sbjct: 121 DGQRKLQPEKVDIETLLSSLSETVRHQINANGGEIEVDTPKLTIVTDRISLDQILGNLFD 180 Query: 303 NALKYLRNGVPGEISIE----GRTKLGFAIFEVTDNGRGIDPKDHQRIFDLFRRAGTQDK 358 NA+KY G P ++ GR G EV DNGRGI +D +R+F+LFRRAG+QD+ Sbjct: 181 NAVKYQMPGRPLRLTARAYPAGR---GAICIEVADNGRGIGEQDLERVFELFRRAGSQDQ 237 Query: 359 PGQGIGLAHVRALVRRLGGTMSVASELHNGSTFTITLP 396 PG+GIGLAHVR+L+R LGG + V S+L GSTF + +P Sbjct: 238 PGEGIGLAHVRSLIRNLGGDIKVESKLGEGSTFVLLMP 275 >DR1174_4 [T] COG0642 Signal transduction histidine kinase Dra Deinococcus radiodurans Length = 255 Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 144/284 (50%), Gaps = 36/284 (12%) Query: 115 EAEARLRDSNINLETIVDERTSDLREANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELR 174 +A+ LR N +LE V RT +L EAN E++ F+Y VSHDLR+PL +I+GF Sbjct: 1 DAQHELRQLNQSLEERVQRRTLELEEANRELEAFSYSVSHDLRTPLRHIVGF-------- 52 Query: 175 GDIFKRIATLNRAASLAPAMPEDATDVAEPELEGSDKQLSDDFNESLGFIKSSIAKMDRL 234 GD+ ++ D AE LS LG I + +M L Sbjct: 53 GDLLRK-------------------DSAE--------ALSPKSQRYLGVITDAAGRMSGL 85 Query: 235 ISAILNLTREGRREFKPERIDLRELIDGIVKTVAHQAVEANATVEVGALPNIVSDRLALE 294 I ++L +R GR+ + +DL EL++ + + + + + LP + D LE Sbjct: 86 IDSLLEFSRMGRQPLRLVPVDLTELVERVWQNLEPDRQGREVRLTLRPLPQVPGDPALLE 145 Query: 295 QIFSNLIDNALKYLRNGVPGEISIEGRTKLGFAIFEVTDNGRGIDPKDHQRIFDLFRRAG 354 +F NL+ NALKY R ++++ G A VTDNG G DPK ++F +F+R Sbjct: 146 LVFQNLLSNALKYSRTREVAQVTVAASEDGGAARITVTDNGVGFDPKYTDKLFGVFQRLH 205 Query: 355 -TQDKPGQGIGLAHVRALVRRLGGTMSVASELHNGSTFTITLPI 397 ++ G GIGLA+VR +V R GG +S +S G+TFT+ LP+ Sbjct: 206 RAEEFDGIGIGLANVRRIVTRHGGQVSGSSVPGEGATFTVVLPL 249 >MTH444 [T] COG0642 Signal transduction histidine kinase Mth Methanothermobacter thermautotrophicus Length = 373 Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 138/278 (49%), Gaps = 40/278 (14%) Query: 120 LRDSNINLETIVDERTSDLREANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFK 179 LR+ N+ L+ ++ L +AN+E++ FAY VSHDLR PL I GF+ Sbjct: 131 LRELNLELK----KQAEKLEDANKELEAFAYSVSHDLRVPLRAIDGFS------------ 174 Query: 180 RIATLNRAASLAPAMPEDATDVAEPELEGSDKQLSDDFNESLGFIKSSIAKMDRLISAIL 239 RI + ED D +L D+ LG I+ + KM +LI IL Sbjct: 175 RI------------LVEDYED-----------KLDDEGVRILGIIRDNTRKMGQLIDDIL 211 Query: 240 NLTREGRREFKPERIDLRELIDGIVKTVAHQAVEANATVEVGALPNIVSDRLALEQIFSN 299 L+R GR+E +D+REL + + +A Q + V LP ++DR + Q+ N Sbjct: 212 LLSRAGRQEMNLAMLDMRELAESTYRELASQEEGRSIEFSVADLPPAMADRALMGQVMGN 271 Query: 300 LIDNALKYLRNGVPGEISIEGRTKLGFAIFEVTDNGRGIDPKDHQRIFDLFRRAGTQDK- 358 L+ NA+K+ R+ P I + + V DNG G D K ++F LF+R +Q++ Sbjct: 272 LLSNAIKFTRDRDPAVIEVGYMDGGDEHTYYVKDNGAGFDMKYASKLFGLFQRLHSQEEF 331 Query: 359 PGQGIGLAHVRALVRRLGGTMSVASELHNGSTFTITLP 396 G G+GL+ V+ +++R GG + ++ G+T TLP Sbjct: 332 EGTGVGLSIVQRIIKRHGGRVWGEGKVDGGATIYFTLP 369 >slr0473 [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) Syn Synechocystis Length = 748 Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 37/262 (14%) Query: 137 DLREANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFKRIATLNRAASLAPAMPE 196 +L +N ++++FAYI SHDL+ PL + + +L E+R + A+ E Sbjct: 521 NLERSNADLKKFAYIASHDLQEPLNQVSNYV-QLLEMR---------------YSEALDE 564 Query: 197 DATDVAEPELEGSDKQLSDDFNESLGFIKSSIAKMDRLISAILNLTREGRREFKPERIDL 256 DA D + F + ++ M LI IL + + + D+ Sbjct: 565 DAKDF-------------------IDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTDV 605 Query: 257 RELIDGIVKTVAHQAVEANATVEVGALPNIVSDRLALEQIFSNLIDNALKYLRNGVPGEI 316 +E++D + + + E+ A +EVG++P +++D++ L Q+F NLI N +K+ + P +I Sbjct: 606 QEVVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDKSP-KI 664 Query: 317 SIEGRTKLGFAIFEVTDNGRGIDPKDHQRIFDLFRRAGTQDK-PGQGIGLAHVRALVRRL 375 I G + +F V DNG GIDP+ +RIF +F+R T+D+ G G+GLA + ++ Sbjct: 665 KIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKIIEGH 724 Query: 376 GGTMSVASELHNGSTFTITLPI 397 G + + S GSTF ++PI Sbjct: 725 QGQIWLESNPGEGSTFYFSIPI 746