BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0025.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll7837 [K] COG4941 Predicted RNA polymerase sigma factor contai...   143   2e-34
PA1351 [K] COG4941 Predicted RNA polymerase sigma factor contain...   126   3e-29
mlr2588 [K] COG4941 Predicted RNA polymerase sigma factor contai...   111   9e-25
mll2869 [K] COG4941 Predicted RNA polymerase sigma factor contai...   106   2e-23
SMc01150 [K] COG4941 Predicted RNA polymerase sigma factor conta...   100   2e-21

>mll7837 [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR
           repeat domain Mlo Mesorhizobium loti
          Length = 417

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 1   MLLHDARRAGRQTAGGDIVLLEEQDRSLWDFRQIAEGLELVEEALRMPGRPQSYAVQAAI 60
           MLLH+ARRA R  A GDIVLLE+QDRSLWD   I+E   L+  AL    R   Y +QAAI
Sbjct: 237 MLLHEARRATRVDANGDIVLLEDQDRSLWDGGLISEANGLIGRAL-ASRRVGPYILQAAI 295

Query: 61  AALHARAPSYKDTDWPQIAGLYEVLLRISPSPVIELNHAAAVSMVDGPARALDLIDALDA 120
           A++HA A    DTDW QI  LY+VL R++PSPV+ LN AAA+ M DGP   L  I+A   
Sbjct: 296 ASIHAEAAGTVDTDWTQIVALYDVLRRVAPSPVVTLNRAAALGMRDGPQAGLTAIEAALE 355

Query: 121 RGTLKGYDQLPAVRADLLRRLGRKDEARQAYLAATAATQLEPLRRLYARRIAEM 174
           +G L GY    A RAD+LRRLG  + AR +Y  A   T+    RR    R+ ++
Sbjct: 356 QGGLDGYHLAHAARADMLRRLGLTEAARASYQQALDLTRQPAERRFLKTRLDQL 409


>PA1351 [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR
           repeat domain Pae Pseudomonas aeruginosa
          Length = 407

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 114/171 (66%), Gaps = 1/171 (0%)

Query: 4   HDARRAGRQTAGGDIVLLEEQDRSLWDFRQIAEGLELVEEALRMPGRPQSYAVQAAIAAL 63
           HD+RR  R +A G++V L+EQDR+LWD   I EGL LVE AL    R   Y +QAAI A+
Sbjct: 237 HDSRRQARISASGELVRLDEQDRALWDRGLIVEGLGLVERAL-ASRRVGPYTLQAAIVAV 295

Query: 64  HARAPSYKDTDWPQIAGLYEVLLRISPSPVIELNHAAAVSMVDGPARALDLIDALDARGT 123
           HA+AP  +DTDW +I  LY+ LL ++PSPV+ELN A A++M DG    L ++DAL ARG 
Sbjct: 296 HAQAPRAEDTDWARIVALYDALLYLAPSPVVELNRAVALAMRDGVEVGLAVVDALLARGE 355

Query: 124 LKGYDQLPAVRADLLRRLGRKDEARQAYLAATAATQLEPLRRLYARRIAEM 174
           L  Y    + RAD  RRLGR+ EAR+AY AA A  + EP RR   +R+ E+
Sbjct: 356 LADYHLAHSARADFCRRLGRRREAREAYRAALALARQEPERRFIEQRLREL 406


>mlr2588 [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR
           repeat domain Mlo Mesorhizobium loti
          Length = 413

 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 90/151 (59%)

Query: 1   MLLHDARRAGRQTAGGDIVLLEEQDRSLWDFRQIAEGLELVEEALRMPGRPQSYAVQAAI 60
           M L+ +R   R    G+ +LL +QDR+ W++  I  GL+ +  A+ +   P  Y +QA I
Sbjct: 241 MELNASRFPARTGKAGEPILLLDQDRTRWNWSLIRRGLDGLNRAMTLTSTPGPYLLQAMI 300

Query: 61  AALHARAPSYKDTDWPQIAGLYEVLLRISPSPVIELNHAAAVSMVDGPARALDLIDALDA 120
           AA HARA +  DTDW  I+  Y+ L   +PSP++E+N A AV M  GPA+ L +++AL  
Sbjct: 301 AACHARAMTSADTDWIAISAYYQALALAAPSPIVEINRAVAVGMAFGPAQGLAIVEALKD 360

Query: 121 RGTLKGYDQLPAVRADLLRRLGRKDEARQAY 151
              LK    LP VR DLL +LG + EAR A+
Sbjct: 361 EPRLKDSHLLPTVRGDLLEKLGHQTEARAAF 391


>mll2869 [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR
           repeat domain Mlo Mesorhizobium loti
          Length = 424

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 97/151 (64%), Gaps = 3/151 (1%)

Query: 1   MLLHDARRAGRQTAGGDIVLLEEQDRSLWDFRQIAEGLELVEEALRMPGRPQSYAVQAAI 60
           +LL  AR   R    G+IVLLE+QDR LW  + I EGL LV++ALR   +P  Y VQAAI
Sbjct: 240 LLLQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRH-RKPGPYQVQAAI 298

Query: 61  AALHARAPSYKDTDWPQIAGLYEVLLRISPSPVIELNHAAAVSMVDGPARALDLIDALDA 120
           AALHARA   +DTDW +I  LY +L ++ PSPVI LN A AVS + GP  AL +I+ L+ 
Sbjct: 299 AALHARAEKAEDTDWVEIDLLYGLLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEE 358

Query: 121 RGTLKGYDQLPAVRADLLRRLGRKDEARQAY 151
           R  L GY     ++  LL +L R +EAR A+
Sbjct: 359 R--LSGYFHFFGLKGGLLMQLDRGEEARVAF 387


>SMc01150 [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR
           repeat domain Sme Sinorhizobium meliloti
          Length = 423

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 3/151 (1%)

Query: 1   MLLHDARRAGRQTAGGDIVLLEEQDRSLWDFRQIAEGLELVEEALRMPGRPQSYAVQAAI 60
           +LL  +R   R  A G +VLLE+QDR LW    I E L ++++A+R   RP  Y +QAAI
Sbjct: 240 LLLQHSRARARFDANGAVVLLEDQDRRLWSRPMITEALAMIDKAMRH-RRPGPYQIQAAI 298

Query: 61  AALHARAPSYKDTDWPQIAGLYEVLLRISPSPVIELNHAAAVSMVDGPARALDLIDALDA 120
           AALHARA   + TDW +I  LY+ L R+ PSPV+ LN A AVS  +GP  AL +++ L  
Sbjct: 299 AALHARAERPEQTDWEEIDLLYQALERLQPSPVVTLNRAVAVSKREGPEAALAMVEPLGE 358

Query: 121 RGTLKGYDQLPAVRADLLRRLGRKDEARQAY 151
           R  L GY     +R  LL++LGR  EAR A+
Sbjct: 359 R--LSGYFYYHGLRGGLLKQLGRACEARTAF 387