BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0106.p         (284 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr1196 [K] COG2207 AraC-type DNA-binding domain-containing prot...   253   3e-67
CC2573 Non COG                                                         97   4e-20
mll7889 [K] COG2207 AraC-type DNA-binding domain-containing prot...    69   2e-11
SMc04264 [K] COG2207 AraC-type DNA-binding domain-containing pro...    63   8e-10

>mlr1196 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo
           Mesorhizobium loti
          Length = 276

 Score =  253 bits (646), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/260 (52%), Positives = 174/260 (66%), Gaps = 5/260 (1%)

Query: 10  FDLAQRLPSPRLAGLIVRITGYRETATGRFAQRQTAPLIVPLIISFGSPFLIALSREPGA 69
           F++ +RLP P L G++  I GYRETA G F   + A L VPL+ISF  PF I L + PG 
Sbjct: 19  FEMRRRLPDPALDGIVSDICGYRETAAGHFRNVEYASLTVPLVISFAEPFAIGLGKAPGD 78

Query: 70  ADRQLSFAAGLHAGPVYIESDGRAACVQVDFTPLGAYSFFGGAVTDLVGRMVDIDDVLGH 129
            DR  SFAAGL AGPV IES G A CVQ++FTPLGA  FF   +++L   MV +DDVLG 
Sbjct: 79  NDRFASFAAGLFAGPVMIESFGSACCVQINFTPLGARRFFRLPMSELTDSMVVLDDVLGA 138

Query: 130 DGRRLREQLGAVTCWQRRFDLLEAFV---LRRAGRMPSPEVAFAYRKLARSAGAISITAL 186
           DG  LREQLG    W  RFDL EAFV   L RA   P  ++A+AY ++  S G   I+++
Sbjct: 139 DGMALREQLGNTPDWASRFDLAEAFVTARLVRAAETPL-QIAWAYDRIVASGGRARISSI 197

Query: 187 ADEIGWSRKHLASRFRSELGLAPKSLARMMRFHRASQLAQSQAALGWAGIAVESGYADQA 246
           A+++GWSRKHLA  F + +G+ PK+L+R++RF+RA  L++ Q    WA IA + GYADQA
Sbjct: 198 AEKLGWSRKHLAGSFSNAIGIGPKTLSRIVRFNRALGLSR-QPTADWADIAADCGYADQA 256

Query: 247 HLAREFVEFAGEPPTAWARR 266
           HL REF + AGE PTA + R
Sbjct: 257 HLVREFRDLAGETPTALSVR 276


>CC2573 Non COG
          Length = 270

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 85/175 (48%)

Query: 91  GRAACVQVDFTPLGAYSFFGGAVTDLVGRMVDIDDVLGHDGRRLREQLGAVTCWQRRFDL 150
           G+     + FTP G  + FG   T L  +  D   VLG     + E+L        R  +
Sbjct: 85  GQLDLFTIQFTPTGFSALFGHPTTVLTDQAHDARSVLGERVGEVSERLATTPDMTHRVAI 144

Query: 151 LEAFVLRRAGRMPSPEVAFAYRKLARSAGAISITALADEIGWSRKHLASRFRSELGLAPK 210
            EA++ R     P   +A+A R++ R  G + +  LA     S +    RF + +G+APK
Sbjct: 145 AEAWLRRLVSGAPEDPIAWAARQMTRLTGGVRVAELAALTDLSERQFERRFTAAVGVAPK 204

Query: 211 SLARMMRFHRASQLAQSQAALGWAGIAVESGYADQAHLAREFVEFAGEPPTAWAR 265
             AR++RF  A +L +   A GWA IA  +GY DQAH+  EF   +GE P   AR
Sbjct: 205 RYARILRFREALRLHEMGDATGWAAIAHAAGYVDQAHMIHEFRALSGETPERLAR 259


>mll7889 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo
           Mesorhizobium loti
          Length = 256

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 5/175 (2%)

Query: 93  AACVQVDFTPLGAYSFFGGAVTDLVGRMVDIDDVLGHDGRRLREQLGAVTCWQRRFDLLE 152
              V + F P  A  + G   + +VG  +D+ D+ G   R L   + AV         L+
Sbjct: 76  TTIVGLRFRPGAAAGWLGVPASQIVGERLDLGDLWGMRARHLAGNVRAVPDLAGMVGQLQ 135

Query: 153 AFV---LRRAGRMPSPEVAFAYRKLARSAGAIS--ITALADEIGWSRKHLASRFRSELGL 207
             +    +     P   + FA+  + R   A    +  L   +  S + L  RF    G 
Sbjct: 136 KAIGAHTQDHHHAPDAVMGFAFDVIDRGLPADKPLVPFLLRTLHMSERTLRRRFEGSFGY 195

Query: 208 APKSLARMMRFHRASQLAQSQAALGWAGIAVESGYADQAHLAREFVEFAGEPPTA 262
            PK+L R++RFHR  +L Q+ +    A +A+E+GYADQAHL RE    +G  P A
Sbjct: 196 GPKTLDRILRFHRYRRLRQASSDTSVAVLAIEAGYADQAHLIRESRRLSGITPAA 250


>SMc04264 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme
           Sinorhizobium meliloti
          Length = 296

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 105 AYSFFGGAVTDLVGRMVDIDDVLGHDGRRLREQLGAVTCWQRRFDLLEAFVLRR--AGRM 162
           A S+    + ++ G+ V +  V G     +  ++        R  +L A +L R  A   
Sbjct: 114 AASWLRTPLREMTGQTVPLHLVWGPATNEIEARIRDAASTPERLGVLAAALLGRLSAAEP 173

Query: 163 PSPEVA--FAYRKLARSAGAISITALADEIGWSRKHLASRFRSELGLAPKSLARMMRFHR 220
           P P++A   A+ ++ RS    +I  L  EIG S + L       LG   K+L R++R  R
Sbjct: 174 PPPDIAACVAHLQVGRSTVDDAIRTLVREIGTSERTLRRHCHEHLGYGAKTLGRILRLQR 233

Query: 221 ASQLAQSQAALGWAGIAVESGYADQAHLARE 251
                +S+     A +AV++GYADQAHLARE
Sbjct: 234 FLAACRSRPGDTLANLAVDAGYADQAHLARE 264