BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0102.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1775 [J] COG0689 RNase PH Bme Brucella melitensis 347 1e-95 AGc571 [J] COG0689 RNase PH Atu Agrobacterium tumefaciens strain... 347 2e-95 mlr4622 [J] COG0689 RNase PH Mlo Mesorhizobium loti 346 3e-95 SMc01144 [J] COG0689 RNase PH Sme Sinorhizobium meliloti 338 8e-93 CC0152 [J] COG0689 RNase PH Ccr Caulobacter vibrioides 289 3e-78 >BMEI1775 [J] COG0689 RNase PH Bme Brucella melitensis Length = 238 Score = 347 bits (890), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 166/225 (73%), Positives = 194/225 (86%), Gaps = 1/225 (0%) Query: 1 VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60 +S ERGV K+AEGSC+VKFGDTHVL TA+LEE++P W++ G+GWVTAEYGMLPR+T ER Sbjct: 14 ISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVTAEYGMLPRSTGER 73 Query: 61 TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120 RREA+AGKQGGRT EIQRLIGRSLRA VD++ALGE QITVDCDVIQADGGTRTA+ITG Sbjct: 74 MRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQADGGTRTAAITGG 133 Query: 121 WVALADCINWMKTRNMLKT-NVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMT 179 WVAL +C+ WM+ R M++ VL+D+VAAISCGIY+G PVLDLDYAEDS A+TD+NFVMT Sbjct: 134 WVALHECLRWMEARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYAEDSVAETDSNFVMT 193 Query: 180 GDGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224 G G I+E+QGTAE PFSE EF ALM LAR G+ RLV LQK+AVA Sbjct: 194 GKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >AGc571 [J] COG0689 RNase PH Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 163/225 (72%), Positives = 192/225 (85%), Gaps = 1/225 (0%) Query: 1 VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60 VS ER K+AEGSC+VKFGDTHVLVTA+LEE+ PPWL+ G+GWVTAEYGMLPR+T ER Sbjct: 59 VSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVTAEYGMLPRSTNER 118 Query: 61 TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120 +REA++GKQGGRT EIQRLIGRSLRA VDL+ALGERQI++DCDVIQADGGTRTASITGA Sbjct: 119 MKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQADGGTRTASITGA 178 Query: 121 WVALADCINWMKTRNMLKT-NVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMT 179 W+AL DC+ WM+TRNM+K VL+D++AAISCGI+ PV+DLDY EDS A+TDANFV+T Sbjct: 179 WIALHDCLKWMETRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYLEDSSAETDANFVIT 238 Query: 180 GDGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224 G G I+EVQGTAE PFSE EFL L+ LA+ G + LV LQK A+A Sbjct: 239 GSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 283 >mlr4622 [J] COG0689 RNase PH Mlo Mesorhizobium loti Length = 238 Score = 346 bits (887), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 165/225 (73%), Positives = 192/225 (85%), Gaps = 1/225 (0%) Query: 1 VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60 +S ERGV K+AEGSC+VKFGDTHVL TA+LEE++P W++ G+GWVTAEYGMLPR+T ER Sbjct: 14 ISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVTAEYGMLPRSTGER 73 Query: 61 TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120 RREASAGKQGGRT+EIQRLIGRSLRA VDL+ALGE+QITVDCDVIQADGGTRTASITG Sbjct: 74 MRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQADGGTRTASITGG 133 Query: 121 WVALADCINWMKTRNMLK-TNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMT 179 WVAL DC+ WM+ R M + VL+D+VAAISCGI+ G PV+DLDY EDS A TDANFVMT Sbjct: 134 WVALYDCLRWMEARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYLEDSAAGTDANFVMT 193 Query: 180 GDGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224 G G I+E+QGTAE PFSE +F LM LA+KG+ RLV LQ++AVA Sbjct: 194 GKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238 >SMc01144 [J] COG0689 RNase PH Sme Sinorhizobium meliloti Length = 239 Score = 338 bits (866), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 159/225 (70%), Positives = 189/225 (84%), Gaps = 1/225 (0%) Query: 1 VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60 VS ER K+AEGSC+V+FGDTHVL TA+LEE++P WL+ G+GW+TAEYGMLPRAT ER Sbjct: 14 VSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWITAEYGMLPRATGER 73 Query: 61 TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120 RREA+ GKQ GRT EIQRLIGRSLRA VDL ALGERQI++DCDVIQADGGTRTASITGA Sbjct: 74 MRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQADGGTRTASITGA 133 Query: 121 WVALADCINWMKTRNMLK-TNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMT 179 W+AL DC+ WM+ RNM+K VL+D+VAAISCGI+ PV+DLDY EDS A+TDANFVMT Sbjct: 134 WIALHDCLKWMEARNMVKLEKVLKDHVAAISCGIFANQPVIDLDYLEDSAAETDANFVMT 193 Query: 180 GDGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224 G G ++E+QGTAE PFSE EF +LM LA+ G+A LV++QK A+A Sbjct: 194 GSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIA 238 >CC0152 [J] COG0689 RNase PH Ccr Caulobacter vibrioides Length = 238 Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 141/223 (63%), Positives = 173/223 (77%) Query: 1 VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60 V+LE GV +YAEGSC++ FG T VLVTAT+EE +P W++ +G GWVTAEYGMLPRAT R Sbjct: 14 VTLETGVNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVTAEYGMLPRATHTR 73 Query: 61 TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120 RREA+AGKQ GRT EIQRLIGRSLRA VDL+ALGERQIT+DCDV+QADGGTRTA+ITGA Sbjct: 74 GRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQADGGTRTAAITGA 133 Query: 121 WVALADCINWMKTRNMLKTNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMTG 180 WVAL ++ +LKT+ + VAA+SCG++ G PVLDLDY EDS A+ D+NFV+TG Sbjct: 134 WVALRLATKYLLDEGVLKTDPILGQVAAVSCGVFNGVPVLDLDYEEDSNAEADSNFVLTG 193 Query: 181 DGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAV 223 G I+E+Q T EK F+ EF +L LA KG+ L LQ+ A+ Sbjct: 194 VGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQRAAI 236