BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0052.p         (563 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  160   5e-39
alr3599 [T] COG3706 Response regulator containing a CheY-like re...   159   2e-38
mll9509 [T] COG3706 Response regulator containing a CheY-like re...   156   1e-37
sll1673_3 [T] COG2199 FOG Syn Synechocystis                           154   6e-37
slr0829_3 [T] COG2199 FOG Syn Synechocystis                           149   2e-35

>RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 177

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 379 RLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLMMIDVDHFKLYNDTYGHPEG 438
           R   +A+ DAL+GLANRR    RLD EW RA +    LS++MIDVDHFK YND YGHP+G
Sbjct: 7   RHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYGHPDG 66

Query: 439 DACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAHALAIGETVRTAVLGLAVPH 498
           DA L  +   +          A RYGGEEFC++LP +D   A  + ET+R A+L L +PH
Sbjct: 67  DAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVLNIPH 126

Query: 499 ASSSHCVVTVSVGVATTKPNETQRP--GDLIEAADAALYAAKRRGRN 543
           A S+   +TVS+G A+  P  +  P    L +AADA LY AK  GRN
Sbjct: 127 ARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRN 173


>alr3599 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Nos Nostoc sp. PCC 7120
          Length = 344

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 111/180 (61%), Gaps = 5/180 (2%)

Query: 371 RELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLMMIDVDHFKLYN 430
           ++L A+N  L  +A++D L+GLANRR F + L+ +W+   Q    LSL++ D+D+FK YN
Sbjct: 162 KQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKFYN 221

Query: 431 DTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAHALAIGETVRTA 490
           D YGHP GD CL ++G VLS  A        RYGGEEF +++P T A  A+ +   ++T+
Sbjct: 222 DQYGHPTGDICLQKVGAVLSYKAQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAHAIQTS 281

Query: 491 VLGLAVPH---ASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKRRGRNAVIE 547
           V  L + H   A S H  +T+S+GVAT  P     P DLI AAD ALY AK  GRN + +
Sbjct: 282 VRDLQIAHDKSAVSQH--ITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRNRICQ 339


>mll9509 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Mlo Mesorhizobium loti
          Length = 354

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 109/183 (59%), Gaps = 3/183 (1%)

Query: 366 LSQRERELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLMMIDVDH 425
           L + +R+L+++N  L  +  ID L+GL NRR F   L  EW RA + +  LSL+MID D+
Sbjct: 171 LRESQRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADN 230

Query: 426 FKLYNDTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAHALAIGE 485
           FK YNDTYGH  GD  L +I  V+   +  +   A RYGGEEF ++L +T    + AI E
Sbjct: 231 FKRYNDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAE 290

Query: 486 TVRTAVLGLAVPHASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKRRGRNAV 545
            +   V  L +PH       VT+SVGVATT PNE + P D + AAD AL+ AK  GRN V
Sbjct: 291 QLVQGVRELNIPHGPDR---VTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRV 347

Query: 546 IEH 548
             H
Sbjct: 348 ALH 350


>sll1673_3 [T] COG2199 FOG Syn Synechocystis
          Length = 176

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 373 LVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLMMIDVDHFKLYNDT 432
           L A+N +L ++A+ID L+ +ANRR F   L  EW R  + +  LSL+++D+D+FK YND 
Sbjct: 1   LQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDL 60

Query: 433 YGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAHALAIGETVRTAVL 492
           YGH +GD CL ++   L  IA        RYGGEEF ++LPNT+   ALA+ E +  A+ 
Sbjct: 61  YGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIA 120

Query: 493 GLAVPHASSS-HCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKRRGRNAVI 546
            LA+PH  SS    VT+S+GV++  P        +I  AD ALY+AK +GRN  I
Sbjct: 121 ALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAI 175


>slr0829_3 [T] COG2199 FOG Syn Synechocystis
          Length = 188

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 1/171 (0%)

Query: 377 NDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLMMIDVDHFKLYNDTYGHP 436
           N +L+ +  ID L+ +ANRR F  R+  EW R  + +  +SL+M D+D FK YND YGHP
Sbjct: 5   NKKLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDRYGHP 64

Query: 437 EGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAHALAIGETVRTAVLGLAV 496
           EGD CL R+ +     A+       R+GGEEF +LLP TD   A+ + E +  A+  LA+
Sbjct: 65  EGDLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAISQLAI 124

Query: 497 PH-ASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKRRGRNAVI 546
            H AS     +T+S+G+ T  P++      LI+ AD ALY AKRRGRN  +
Sbjct: 125 AHEASPISGQITISLGIGTQFPSKELISRTLIKQADMALYEAKRRGRNQYV 175