BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0038.p         (108 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4247 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhiz...   183   7e-47
SMc03806 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhi...   180   8e-46
AGc4999 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobact...   177   5e-45
PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomon...   162   2e-40
glnK [E] COG0347 Nitrogen regulatory protein PII Eco Escherichia...   160   9e-40

>mll4247 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhizobium loti
          Length = 112

 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 99/108 (91%)

Query: 1   MAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVA 60
           MAIIKPFKL+EVR+ALTA+G+ GLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVA
Sbjct: 5   MAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVA 64

Query: 61  VNSDQVDKTIDAITSAAKTGQIGDGKIFVISLDHAVRIRTGEADAAAL 108
           V++D VDK ++AIT+AAKTGQIGDGKIFV  +D AVRIRTGE D  AL
Sbjct: 65  VSADTVDKAVEAITAAAKTGQIGDGKIFVFGIDQAVRIRTGETDTDAL 112


>SMc03806 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhizobium
           meliloti
          Length = 112

 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 99/108 (91%)

Query: 1   MAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVA 60
           MAIIKPFKL+EVR+ALTA+G+ GLTVTEVKGYGRQKGHTEIYRG EYAVSFLPK+K+E+A
Sbjct: 5   MAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVSFLPKLKVEIA 64

Query: 61  VNSDQVDKTIDAITSAAKTGQIGDGKIFVISLDHAVRIRTGEADAAAL 108
           V ++ VD+ ++AI SAAKTGQIGDGKIFV S+DHAVRIRTGE D+ AL
Sbjct: 65  VATEIVDRAVEAIASAAKTGQIGDGKIFVYSIDHAVRIRTGETDSEAL 112


>AGc4999 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 116

 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 96/108 (88%)

Query: 1   MAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVA 60
           MAIIKPFKL+EVR+ALT +G+ GLTVTEVKGYGRQKGHTEIYRG EYAVSFLPK+KIE+A
Sbjct: 9   MAIIKPFKLDEVREALTGVGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVSFLPKLKIEIA 68

Query: 61  VNSDQVDKTIDAITSAAKTGQIGDGKIFVISLDHAVRIRTGEADAAAL 108
           V SD VDK ++AI SAAKTGQIGDGKIFV S++ AVRIRTGE +  AL
Sbjct: 69  VPSDVVDKAVEAIASAAKTGQIGDGKIFVYSIEQAVRIRTGETNTEAL 116


>PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomonas
           aeruginosa
          Length = 112

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 94/107 (87%)

Query: 2   AIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVAV 61
           AIIKPFKL++VR++L+ IGV G+TVTEVKG+GRQKGHTE+YRGAEY V FLPK+KI+VA+
Sbjct: 6   AIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIDVAI 65

Query: 62  NSDQVDKTIDAITSAAKTGQIGDGKIFVISLDHAVRIRTGEADAAAL 108
             DQ+D+ I+AIT AA TG+IGDGKIFV++L+ A+RIRTGE D  A+
Sbjct: 66  ADDQLDRVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGETDTDAI 112


>glnK [E] COG0347 Nitrogen regulatory protein PII Eco Escherichia coli
           K12
          Length = 112

 Score =  160 bits (404), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 92/106 (86%)

Query: 3   IIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVAVN 62
           IIKPFKLE+VR+AL++IG+ GLTVTEVKG+GRQKGH E+YRGAEY+V+FLPK+KI+VA+ 
Sbjct: 7   IIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIA 66

Query: 63  SDQVDKTIDAITSAAKTGQIGDGKIFVISLDHAVRIRTGEADAAAL 108
            DQ+D+ ID ++ AA TG+IGDGKIFV  L   +RIRTGEAD AAL
Sbjct: 67  DDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 112