BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0027.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc03841 [OU] COG0740 Protease subunit of ATP-dependent Clp prot... 334 9e-92 AGc3003 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 326 2e-89 mlr0748 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 292 4e-79 CC1963 [OU] COG0740 Protease subunit of ATP-dependent Clp protea... 285 4e-77 BMEI0874 [OU] COG0740 Protease subunit of ATP-dependent Clp prot... 279 3e-75 >SMc03841 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Sme Sinorhizobium meliloti Length = 205 Score = 334 bits (856), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 155/204 (75%), Positives = 178/204 (87%) Query: 1 MRDMMQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLEAENP 60 MR+ MQLVPMV+EQSSRGERSFDIYSRLLRERIIFLNGEVNDA+S LVCAQLLFLEAE+P Sbjct: 1 MREAMQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAESP 60 Query: 61 HKPINLYINSYGGVITSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGEPGHRAALP 120 KPI LYINS GGV+TSG AMYDTM++I+APVHTLCMGTARSMGSFLLMAGE G R ALP Sbjct: 61 KKPIQLYINSPGGVVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEAGERTALP 120 Query: 121 NASLHVHQPLGGFQGQASDILIHATEMQETKRRIIRLYAQHCGRTEADVERTLDRDHFMS 180 NAS+ VHQP GGFQGQASD+LIHA E++ TK R+ RLYA+HCGRT + ER +DRD FM+ Sbjct: 121 NASILVHQPSGGFQGQASDMLIHAEEIRRTKHRMTRLYAEHCGRTYEEFERAMDRDRFMT 180 Query: 181 AQQALEWGLIDKVFAERDAAEKHD 204 A++ALEWGLID++ ER+ + D Sbjct: 181 AEEALEWGLIDRIITEREIGAERD 204 >AGc3003 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 202 Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 151/200 (75%), Positives = 177/200 (88%) Query: 1 MRDMMQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLEAENP 60 MR+ MQLVPMV+EQSSRGERSFDIYSRLLRERIIFLNGEV+D +S LVCAQLLFLEAENP Sbjct: 1 MRETMQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVDDTVSALVCAQLLFLEAENP 60 Query: 61 HKPINLYINSYGGVITSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGEPGHRAALP 120 KPI+LYINS GG++TSG AMYDTM++I+APVHTLCMGTARSMGSFLLMAGEPG RAALP Sbjct: 61 KKPIHLYINSPGGMVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGTRAALP 120 Query: 121 NASLHVHQPLGGFQGQASDILIHATEMQETKRRIIRLYAQHCGRTEADVERTLDRDHFMS 180 NAS+ +HQP GGFQGQASD+LIHA E+++TK R+ RLYA+HCGR+ + E +DRD FM+ Sbjct: 121 NASILIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAEHCGRSYEEFETAMDRDRFMT 180 Query: 181 AQQALEWGLIDKVFAERDAA 200 Q+ALEWGLID++ R+ A Sbjct: 181 VQEALEWGLIDRILEVREDA 200 >mlr0748 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Mlo Mesorhizobium loti Length = 201 Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 136/200 (68%), Positives = 164/200 (82%) Query: 1 MRDMMQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLEAENP 60 M + LVPMVIEQSSRGER+FDI+SRLLRERIIF+NGE+ND +S LVCAQLL LE++NP Sbjct: 1 MSGLASLVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDVSALVCAQLLSLESDNP 60 Query: 61 HKPINLYINSYGGVITSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGEPGHRAALP 120 K I+LYINS GGV+TSG A+YDTMQ++ PV T+CMG A SMGSFLLMAG PG R ALP Sbjct: 61 DKEISLYINSPGGVVTSGFAIYDTMQYVSCPVSTVCMGFAASMGSFLLMAGTPGRRIALP 120 Query: 121 NASLHVHQPLGGFQGQASDILIHATEMQETKRRIIRLYAQHCGRTEADVERTLDRDHFMS 180 NA++ +HQPLGGFQGQASDI HA + +TK+R+ LYAQHCGR+ +VERTLDRDHFM+ Sbjct: 121 NATILLHQPLGGFQGQASDIQRHAERIGKTKQRMAELYAQHCGRSYEEVERTLDRDHFMT 180 Query: 181 AQQALEWGLIDKVFAERDAA 200 A++A WG++D VF R A Sbjct: 181 AREAQTWGIVDHVFDTRKKA 200 >CC1963 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Ccr Caulobacter vibrioides Length = 210 Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 160/197 (81%) Query: 5 MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLEAENPHKPI 64 M LVPMV+EQ+SRGER+FDI+SRLL+ERIIFL G V D M+ L+CAQLLFLE+ENP K I Sbjct: 10 MNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEI 69 Query: 65 NLYINSYGGVITSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGEPGHRAALPNASL 124 +YINS GGV+T+GLA+YDTMQ+IK+PV T+CMG A SMGS LL AG G R +LPNA + Sbjct: 70 AMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARI 129 Query: 125 HVHQPLGGFQGQASDILIHATEMQETKRRIIRLYAQHCGRTEADVERTLDRDHFMSAQQA 184 VHQP GGF+GQASDI HA ++ +TKRR+ +Y +HCGRT +VERTLDRDHFMSA +A Sbjct: 130 MVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDHFMSADEA 189 Query: 185 LEWGLIDKVFAERDAAE 201 WGL+D V+ RDAAE Sbjct: 190 KAWGLVDHVYDSRDAAE 206 >BMEI0874 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Bme Brucella melitensis Length = 247 Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 136/204 (66%), Positives = 162/204 (79%), Gaps = 4/204 (1%) Query: 1 MRD----MMQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLE 56 MRD +M LVPMV+EQ++RGER++DI+SRLL+ERIIF+NG V D MS LVCAQLLFLE Sbjct: 39 MRDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLE 98 Query: 57 AENPHKPINLYINSYGGVITSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGEPGHR 116 AENP K IN+YINS GGV+TSG+A+YDTMQFI+ PV TLCMG A SMGS LL AG GHR Sbjct: 99 AENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHR 158 Query: 117 AALPNASLHVHQPLGGFQGQASDILIHATEMQETKRRIIRLYAQHCGRTEADVERTLDRD 176 AL NA + VHQP GGFQGQASDI HA ++ + KRR+ +Y +H GR +ERTLDRD Sbjct: 159 YALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRD 218 Query: 177 HFMSAQQALEWGLIDKVFAERDAA 200 HFM+AQ+ALE+GLIDKV RD + Sbjct: 219 HFMTAQEALEFGLIDKVVEARDVS 242