BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0009.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1129 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   163   1e-40
RSc1469 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   161   5e-40
SSO2637 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   158   5e-39
SSO2433 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   154   1e-37
SMc03101 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase,...   152   3e-37

>mll1129 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Mlo Mesorhizobium loti
          Length = 176

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 7   VSLLVNGEPIDAFVLPRLNLADFLRENLKLTGTHVGCEHGVCGACTVRLDGEIVRSCLML 66
           VSL+VNG  +      R  L  FLRENL LTGTHVGC+   CGAC V +DG+ V+SC ML
Sbjct: 14  VSLMVNGRRVSGTAEDRTLLVHFLRENLGLTGTHVGCDTSQCGACVVHVDGKAVKSCTML 73

Query: 67  TVQAQGASVETIEGLSDSGEIADLQAAFRERNALQCGYCTPGMLITAQDLL-KHVSVPDR 125
            VQA G+SV TIEGL++  ++  +QAAF+E + LQCG+CTPGM++TA D++ +H    D 
Sbjct: 74  AVQASGSSVVTIEGLANGADLHPVQAAFKEHHGLQCGFCTPGMIMTATDMINRHPEGLDE 133

Query: 126 RAIREHLSGNYCRCTGYQAIVDAVEATAKMRAE 158
             +R  L GN CRCTGY  IV A+ A +K  A+
Sbjct: 134 ATVRAELEGNICRCTGYHNIVKAILAASKTMAK 166


>RSc1469 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Rso Ralstonia solanacearum
          Length = 175

 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 100/145 (68%)

Query: 5   VPVSLLVNGEPIDAFVLPRLNLADFLRENLKLTGTHVGCEHGVCGACTVRLDGEIVRSCL 64
           + +SL VNG P+   V P   L + LRE+L+LTGTHVGC+   CGACTV ++G  V+SC 
Sbjct: 3   ISLSLSVNGAPVTVSVEPHTLLVELLREHLRLTGTHVGCDTAQCGACTVHMNGRAVKSCN 62

Query: 65  MLTVQAQGASVETIEGLSDSGEIADLQAAFRERNALQCGYCTPGMLITAQDLLKHVSVPD 124
           +L VQA GA V TIEGL+ +G++  +Q AFRE + LQCG+CTPGM++ A  L+     PD
Sbjct: 63  ILAVQADGADVTTIEGLARNGKLHPMQEAFRECHGLQCGFCTPGMVMAATALVAQYPHPD 122

Query: 125 RRAIREHLSGNYCRCTGYQAIVDAV 149
            R +RE L GN CRCTGY  IV AV
Sbjct: 123 ERQVREQLDGNLCRCTGYHNIVRAV 147


>SSO2637 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sso Sulfolobus solfataricus
          Length = 163

 Score =  158 bits (399), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 5   VPVSLLVNGEPIDAFVLPRLNLADFLRENLKLTGTHVGCEHGVCGACTVRLDGEIVRSCL 64
           + + + VNG   + +V PR+ L DFLRE L LTGT +GC+   CGACTV L+G+ V+SC 
Sbjct: 10  IKIKVKVNGVLYERYVSPRILLVDFLREELGLTGTKIGCDTTTCGACTVLLNGKSVKSCT 69

Query: 65  MLTVQAQGASVETIEGLSDSGEIADLQAAFRERNALQCGYCTPGMLITAQDLLKHVSVPD 124
           +  VQA GA + TIEGLS   ++  +Q AF+E  ALQCG+CTPGM++ A  LLK    P 
Sbjct: 70  LFAVQADGAEITTIEGLSVDSKLHPIQEAFKENFALQCGFCTPGMIMQAYFLLKENPNPS 129

Query: 125 RRAIREHLSGNYCRCTGYQAIVDAV-EATAKMRA 157
              +R+ L GN CRCTGYQ IV AV +A+ ++RA
Sbjct: 130 EEEVRDGLHGNICRCTGYQNIVKAVLDASRRLRA 163


>SSO2433 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sso Sulfolobus solfataricus
          Length = 171

 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 103/158 (65%), Gaps = 2/158 (1%)

Query: 2   NAPVPVSLLVNGEPIDAFVLPRLNLADFLRENLKLTGTHVGCEHGVCGACTVRLDGEIVR 61
           +  V V L VNG+  +    PR  L   LRE L  TG H+GC+   CGACTV +DG  V+
Sbjct: 10  DQKVKVHLKVNGQDYEVETEPRRLLVHVLRE-LGFTGVHIGCDTSNCGACTVIMDGRSVK 68

Query: 62  SCLMLTVQAQGASVETIEGLSDSGEIADLQAAFRERNALQCGYCTPGMLITAQDLLKHVS 121
           SC +L V+A GA + TIEGL+  G++  +Q AF E++ LQCGYCTPGM++ A  LLK   
Sbjct: 69  SCTILAVEADGAEITTIEGLAKDGKLHPIQEAFWEKHGLQCGYCTPGMIMEAYWLLKENP 128

Query: 122 VPDRRAIREHLSGNYCRCTGYQAIVDAVE-ATAKMRAE 158
            P    IRE +SGN CRCTGYQ I++AV+ A+ K+R E
Sbjct: 129 NPTEEEIREGISGNLCRCTGYQNIIEAVKLASEKLRME 166


>SMc03101 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sme Sinorhizobium meliloti
          Length = 162

 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 99/149 (66%), Gaps = 1/149 (0%)

Query: 6   PVSLLVNGEPIDAFVLPRLNLADFLRENLKLTGTHVGCEHGVCGACTVRLDGEIVRSCLM 65
            +++ VNG  +      R  L  F+RENL LTGTHVGCE   CGAC V +DG+ V+SC +
Sbjct: 3   KITMTVNGRQVSGTCDDRTLLVHFIRENLGLTGTHVGCETTQCGACVVHMDGQSVKSCSI 62

Query: 66  LTVQAQGASVETIEGLSDSGEIADLQAAFRERNALQCGYCTPGMLITAQDLL-KHVSVPD 124
           L  QA G+++ TIEGL+ +GE+  +QAAF+  + LQCG+CTPGM++TA D++ +H    D
Sbjct: 63  LAAQAAGSAITTIEGLASNGELHPVQAAFKTYHGLQCGFCTPGMVMTAVDMIRRHGGNLD 122

Query: 125 RRAIREHLSGNYCRCTGYQAIVDAVEATA 153
              +R  L GN CRCTGY  IV A+ A A
Sbjct: 123 EATVRAELEGNICRCTGYHNIVQAILAAA 151