BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0001.p         (224 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1475 [E] COG1125 ABC-type proline/glycine betaine transport s...   171   2e-42
SA2237 [E] COG1125 ABC-type proline/glycine betaine transport sy...   155   8e-38
SMb21146 [E] COG1125 ABC-type proline/glycine betaine transport ...   152   6e-37
BS_opuCA [E] COG1125 ABC-type proline/glycine betaine transport ...   150   2e-36
BS_opuBA [E] COG1125 ABC-type proline/glycine betaine transport ...   149   6e-36

>CAC1475 [E] COG1125 ABC-type proline/glycine betaine transport systems,
           ATPase components Cac Clostridium acetobutylicum
          Length = 254

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 2/158 (1%)

Query: 7   IAYAHVGKSFDSGRVVAVDDVSLDVAEGEFLAIVGGSGFGKTTLLRLANRLIEADHGRIA 66
           I + +V K F + +  AVD+V L + EGEF+ I+G SG GKTTLL++ NRL E D G I 
Sbjct: 4   IEFINVSKKFSNAKYKAVDNVDLTIEEGEFITILGSSGSGKTTLLKMINRLYEPDKGSIV 63

Query: 67  VEGEDVNRVDPILLRRRIGYVFQSGGLFPHLSVAGNIGITPHLLGWTQAEISARVDELLD 126
           +  ED+ ++D + LRR IGYV Q  GLFPH+++A NI   P LL W + EI  R+DELL 
Sbjct: 64  LFNEDIKKIDVVKLRRSIGYVIQQVGLFPHMTIANNIATVPKLLKWDKREIEKRIDELLH 123

Query: 127 LVRLDPSQYRERMPHELSGGQRQRVGVAXRRARSAHPR 164
           LV L+P+++++R P +LSGGQ+QR+G+A  RA +  P+
Sbjct: 124 LVGLEPNEFKKRYPSQLSGGQQQRIGLA--RALAVDPK 159


>SA2237 [E] COG1125 ABC-type proline/glycine betaine transport systems,
           ATPase components Sau Staphylococcus aureus N315
          Length = 410

 Score =  155 bits (391), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 6   LIAYAHVGKSFDSGRVVAVDDVSLDVAEGEFLAIVGGSGFGKTTLLRLANRLIEADHGRI 65
           +++  H+ K + SG   AVDD+SLD+  GEF+A +G SG GKTT LR+ NR+IEA  G+I
Sbjct: 3   MLSIKHLTKIY-SGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQI 61

Query: 66  AVEGEDVNRVDPILLRRRIGYVFQSGGLFPHLSVAGNIGITPHLLGWTQAEISARVDELL 125
            ++G+DV  ++P+ LRR IGYV Q  GL PH+++  NI + P LL WT+ E   R  EL+
Sbjct: 62  EIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKELI 121

Query: 126 DLVRLDPSQYRERMPHELSGGQRQRVGVA 154
            LV L P  + ER P ELSGGQ+QR+GV 
Sbjct: 122 KLVDL-PESFLERYPAELSGGQQQRIGVV 149


>SMb21146 [E] COG1125 ABC-type proline/glycine betaine transport systems,
           ATPase components Sme Sinorhizobium meliloti
          Length = 312

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 6   LIAYAHVGKSFDSGRVVAVDDVSLDVAEGEFLAIVGGSGFGKTTLLRLANRLIEADHGRI 65
           +I    + K +  G    V DVSL VA      +VG SG GKTTLLR+ NRL+E   G I
Sbjct: 1   MIEIEEISKRY--GDTTVVSDVSLTVAPHTVTVVVGTSGSGKTTLLRMINRLVEPTAGTI 58

Query: 66  AVEGEDVNRVDPILLRRRIGYVFQSGGLFPHLSVAGNIGITPHLLGWTQAEISARVDELL 125
            ++GED   +    LRRRIGY  Q  GLFPH +VA NI   P LLGW +A I A+V+ELL
Sbjct: 59  KIDGEDNRSIPGFELRRRIGYAIQGHGLFPHRTVAQNIATVPTLLGWEKARIDAKVEELL 118

Query: 126 DLVRLDPSQYRERMPHELSGGQRQRVGVAXRRARSAHP 163
            L +LDPS++  R PHELSGGQ+QRVGVA  RA +A P
Sbjct: 119 KLFQLDPSEFGPRYPHELSGGQQQRVGVA--RALAAEP 154


>BS_opuCA [E] COG1125 ABC-type proline/glycine betaine transport systems,
           ATPase components Bsu Bacillus subtilis
          Length = 380

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 105/158 (66%), Gaps = 4/158 (2%)

Query: 6   LIAYAHVGKSFDSGRVVAVDDVSLDVAEGEFLAIVGGSGFGKTTLLRLANRLIEADHGRI 65
           ++    V K +  G+  AV+ + LD+A+GEF+  +G SG GKTT +++ NRLIE   GRI
Sbjct: 1   MLKLEQVSKVYKGGKK-AVNSIDLDIAKGEFICFIGPSGCGKTTTMKMINRLIEPSSGRI 59

Query: 66  AVEGEDVNRVDPILLRRRIGYVFQSGGLFPHLSVAGNIGITPHLLGWTQAEISARVDELL 125
            ++GE++   DP+ LRR+IGYV Q  GLFPH+++  NI + P LL W + +   R  ELL
Sbjct: 60  FIDGENIMEQDPVELRRKIGYVIQQIGLFPHMTIQQNISLVPKLLKWPEEKRKERARELL 119

Query: 126 DLVRLDPSQYRERMPHELSGGQRQRVGVAXRRARSAHP 163
            LV + P +Y +R PHELSGGQ+QR+GV   RA +A P
Sbjct: 120 KLVDMGP-EYLDRYPHELSGGQQQRIGVL--RALAAEP 154


>BS_opuBA [E] COG1125 ABC-type proline/glycine betaine transport systems,
           ATPase components Bsu Bacillus subtilis
          Length = 381

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 4/158 (2%)

Query: 6   LIAYAHVGKSFDSGRVVAVDDVSLDVAEGEFLAIVGGSGFGKTTLLRLANRLIEADHGRI 65
           ++   +V K++  G+  AV++V+L +A+GEF+  +G SG GKTT +++ NRLIE   G+I
Sbjct: 1   MLTLENVSKTYKGGKK-AVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSAGKI 59

Query: 66  AVEGEDVNRVDPILLRRRIGYVFQSGGLFPHLSVAGNIGITPHLLGWTQAEISARVDELL 125
            ++GE++   DP+ LRR+IGYV Q  GLFPH+++  NI + P LL W + +   R  ELL
Sbjct: 60  FIDGENIMDQDPVELRRKIGYVIQQIGLFPHMTIQQNISLVPKLLKWPEQQRKERARELL 119

Query: 126 DLVRLDPSQYRERMPHELSGGQRQRVGVAXRRARSAHP 163
            LV + P +Y +R PHELSGGQ+QR+GV   RA +A P
Sbjct: 120 KLVDMGP-EYVDRYPHELSGGQQQRIGVL--RALAAEP 154