BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0095.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02635 [L] COG1381 Recombinational DNA repair protein (RecF pa... 191 1e-48 BMEI1285 [L] COG1381 Recombinational DNA repair protein (RecF pa... 187 1e-47 mlr7769 [L] COG1381 Recombinational DNA repair protein (RecF pat... 180 3e-45 AGc1915 [L] COG1381 Recombinational DNA repair protein (RecF pat... 175 8e-44 CC1564 [L] COG1381 Recombinational DNA repair protein (RecF path... 81 2e-15 >SMc02635 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Sme Sinorhizobium meliloti Length = 259 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 147/246 (59%), Gaps = 17/246 (6%) Query: 1 MEWSDEGIVLGVRRHGESSAIVELLTREHGRHLGLVRGGASSRMRPLLQPGNSVTAVWRA 60 M+WSDE I+LG+RRHGESS I E++T HGRHLGLVR G S M+P+LQPGNSV WRA Sbjct: 13 MQWSDEAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRTMQPVLQPGNSVEVSWRA 72 Query: 61 RLDKHLGMYALEGTRLRAATLLGSSHAVYGVTHLAALARLLPGRDPHEDIYWMLQGTLDD 120 RLD+HLG + +E +LRAA+L+ ++ +VYG+ L AL RLLP RDPH +Y L +D Sbjct: 73 RLDEHLGEFRVEPLQLRAASLIETATSVYGIQALGALLRLLPERDPHPHLYEALAVIVDH 132 Query: 121 FEDAGVAAVHLIRFELAMLTELGFG---ARPGKLRGHRGD---VGPDLCVAEIRRRRVPR 174 +D A +RFELA+L +LGFG +R G G R + V P A R P Sbjct: 133 LQDPADAGELFVRFELAVLNDLGFGLDLSRCGA-TGARSELVYVSPKSGRAICREAGAPY 191 Query: 175 RRR----------AANSWSDQDLLDGFQITGLFLLRHVLEPRGQGHSDARDGFINAVTRR 224 R + + + L F++T FL RHV EPRG + ARDGF++A + Sbjct: 192 ADRMLALPDFLSGGSRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKA 251 Query: 225 RRLAGT 230 + A + Sbjct: 252 LKSASS 257 >BMEI1285 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Bme Brucella melitensis Length = 247 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 146/249 (58%), Gaps = 26/249 (10%) Query: 1 MEWSDEGIVLGVRRHGESSAIVELLTREHGRHLGLVRGGASSRMRPLLQPGNSVTAVWRA 60 MEW DEG++LG RRHGE+SAIVE++T HGRH+G+VRGG S RM+PLLQPGN V W A Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60 Query: 61 RLDKHLGMYALEGTRLRAATLLGSSHAVYGVTHLAALARLLPGRDPHEDIYWMLQGTLDD 120 RLD+H+G + +E AA L+ + A+YG+ AA RLLP RDPH +Y L+ ++ Sbjct: 61 RLDEHMGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120 Query: 121 FEDAGVAAVHLIRFELAMLTELGFG--ARPGKLRGHRGDVGPDLCVAEIRRRRVPRRRRA 178 F+D A L+RFE+ ML ELGFG + G + D+ + V+ R V R A Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDL---IYVSPTSGRAVC--REA 175 Query: 179 ANSWSDQ-------------------DLLDGFQITGLFLLRHVLEPRGQGHSDARDGFIN 219 W+++ DL F +TG FL+RHV EPR Q D+R GF+N Sbjct: 176 GAPWAEKLLSLPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLN 235 Query: 220 AVTRRRRLA 228 AV R L+ Sbjct: 236 AVGRAINLS 244 >mlr7769 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Mlo Mesorhizobium loti Length = 253 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 111/254 (43%), Positives = 144/254 (56%), Gaps = 30/254 (11%) Query: 1 MEWSDEGIVLGVRRHGESSAIVELLTREHGRHLGLVRGGASSRMRPLLQPGNSVTAVWRA 60 MEW DEGI+LG R+HGE+SAI+E++TR HGRHLGLVRGG S + +P+LQPGN V +WRA Sbjct: 1 MEWRDEGIILGTRKHGETSAILEVMTRAHGRHLGLVRGGRSRKQQPVLQPGNRVDLLWRA 60 Query: 61 RLDKHLGMYALEGTRLRAATLLGSSHAVYGVTHLAALARLLPGRDPHEDIYWMLQGTLDD 120 RLD+HLG + E + AA L+ S+ AVYG+ +AA RLLP RD H +Y L + Sbjct: 61 RLDEHLGTFQAEAIEMNAARLMDSAVAVYGLQTMAAHLRLLPERDAHGGLYEALSVMIVH 120 Query: 121 FEDAGVAAVHLIRFELAMLTELGFGARPGKL--RGHRGDVGPDLCVAEIRRRRVPRRRRA 178 +DA A + RFEL +L ELGFG + G R D+ V+ R V R A Sbjct: 121 LDDADAAGELVARFELLILDELGFGLDLSQCAATGTRQDLA---YVSPKSGRAVS--REA 175 Query: 179 ANSWSDQDLL-------------------DGFQITGLFLLRHVLEPRGQGHSDARDGFIN 219 W D+ L D F++TG F RHV EPR DAR GF+ Sbjct: 176 GAPWRDKMLALPAFLQRGSGLRADPAAVEDAFRLTGFFFTRHVYEPRAIEQPDARAGFLA 235 Query: 220 AVTR----RRRLAG 229 A+ + R+ +AG Sbjct: 236 ALRKHHATRKAIAG 249 >AGc1915 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 254 Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 134/239 (56%), Gaps = 16/239 (6%) Query: 1 MEWSDEGIVLGVRRHGESSAIVELLTREHGRHLGLVRGGASSRMRPLLQPGNSVTAVWRA 60 M+W DE I+LGV+RHGE+S I E++T GRHLG+VR G S M+P+LQ GN V +WRA Sbjct: 1 MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRA 60 Query: 61 RLDKHLGMYALEGTRLRAATLLGSSHAVYGVTHLAALARLLPGRDPHEDIYWMLQGTLDD 120 RL HLG + +E +LRA L+ ++ AVYGV + AL RLLP RDPH +Y L LD+ Sbjct: 61 RLHDHLGEFRIEPLQLRAGQLMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDN 120 Query: 121 FEDAGVAAVHLIRFELAMLTELGFGARPGKL--RGHRGD---VGPDLCVAEIRRRRVPRR 175 D A +RFELA+L +LGFG + G R D V P A R P Sbjct: 121 LHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDLIYVSPKTGRAVCRTAGAPYA 180 Query: 176 RR-----------AANSWSDQDLLDGFQITGLFLLRHVLEPRGQGHSDARDGFINAVTR 223 R + + + L F++T FL RHV +PRG + ARDGF+ A + Sbjct: 181 ARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALK 239 >CC1564 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Ccr Caulobacter vibrioides Length = 250 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 95/233 (40%), Gaps = 22/233 (9%) Query: 1 MEWSDEGIVLGVRRHGESSAIVELLTREHGRHLGLVRGGASSRMRPLLQPGNSVTAVWRA 60 +EW DE VL R HGE+ AIVELLT G+ V G AS RM+P LQPG V +RA Sbjct: 8 LEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGARVIVRYRA 67 Query: 61 RLDKHLGMYALEGTRLRAATLLGS-SHAVYGVTHLAALARLLPGRDPHEDIYWMLQGTLD 119 +++ LG LE ++L A A LP R+ H + L+ + Sbjct: 68 KVEGQLGSATLEPMGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIR 127 Query: 120 DFEDAGVAAVHLIRFELAMLTELGFGARPGKLRGHRGDVGPDLCVAEIRRRRVPRRRRAA 179 E + +R+E +L ELGFG K DL R R R A Sbjct: 128 VLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCAAT--GAFDDLVYVSPRTGRA-VSREAG 184 Query: 180 NSWSDQ------------------DLLDGFQITGLFLLRHVLEPRGQGHSDAR 214 + D+ D+ G ITG FL + V P + AR Sbjct: 185 KPYHDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPAR 237