BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0073.p (262 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote... 212 6e-55 PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 209 6e-54 PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote... 200 3e-51 PA0163 [K] COG2207 AraC-type DNA-binding domain-containing prote... 190 3e-48 PA3830 [K] COG2207 AraC-type DNA-binding domain-containing prote... 178 9e-45 >PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 160/242 (66%) Query: 20 TARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAVWLVADLE 79 + RP+ A DY G LH H R QL++A+ GV+ V AEGTWVVPP R VWL A +E Sbjct: 7 STRPVFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAGIE 66 Query: 80 HEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPLDYAPATSDERL 139 H +R G V++RT+F+ A +LP+ V V PLLR+L VAAMR+ DY P DER+ Sbjct: 67 HALRFAGQVRMRTLFIAPQARHDLPRDCRVVDVPPLLRQLIVAAMRIAPDYPPGGRDERV 126 Query: 140 MRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLTSKTIHRL 199 M ++LD+LR + +L LH+P P D RLA +C +L A P + ARRL ++ +T+ R Sbjct: 127 MELILDELRVLPILALHVPQPVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLTRA 186 Query: 200 FARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKHFGVPPNA 259 F RETG++F +W ++ RLL +L+ LA G +++VALD GY SQSAF+AMFR+ GV P+ Sbjct: 187 FQRETGLSFVQWLRRMRLLASLDALAAGHSILEVALDLGYDSQSAFSAMFRRTLGVSPSL 246 Query: 260 FY 261 ++ Sbjct: 247 YF 248 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 152/245 (62%), Gaps = 1/245 (0%) Query: 16 DYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAVWLV 75 Y AT R + AM DYP G H H R QLLY GVM VR + WVVPP RAVW+ Sbjct: 8 QYDATPRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVWIP 67 Query: 76 ADLEHEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPLDYAPATS 135 +EHEVRM G V R+++++ +A +P V AVSPLLR+L +AA+ +PL+Y Sbjct: 68 PGVEHEVRMLG-VSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTEGR 126 Query: 136 DERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLTSKT 195 D L +LL +L + LPLH+P+P + R +C A + PD ++AE+WA L + ++ Sbjct: 127 DGALATLLLHELAAAETLPLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSLRS 186 Query: 196 IHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKHFGV 255 +R F R TG++FG W+Q+A ++ AL RLA G V +ALD GY S +AF+ MFR+ G Sbjct: 187 FNRTFRRYTGLSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVLGQ 246 Query: 256 PPNAF 260 PP+AF Sbjct: 247 PPSAF 251 >PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 146/239 (61%), Gaps = 4/239 (1%) Query: 24 MAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAVWLVADLEHEVR 83 +AA+ +D+P G G H HP+ Q LYA G+M + G WV+PP RAVW+ +EHE+ Sbjct: 11 LAAISLDFPDGHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIF 70 Query: 84 MCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPLDYAPATSD--ERLMR 141 M G V +RT+F++ P CV AV+PLLRE+ + A + L+ P D +RL Sbjct: 71 MSGEVHMRTLFIEQPETPTPLSDCCVLAVTPLLREMILRA--IHLESQPRLDDFCQRLQG 128 Query: 142 VLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLTSKTIHRLFA 201 ++L ++ ++ +PL+LPMPRD RL +C AL+ P+ G T + W R+ +S+T+ RLFA Sbjct: 129 LILSEIANLERMPLYLPMPRDRRLQAICQALLKQPELGLTLDDWGLRVGASSRTLARLFA 188 Query: 202 RETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKHFGVPPNAF 260 +E M+F EWRQQ RL AL RL G V VA D GY S AF++MFR+ G P + Sbjct: 189 QELQMSFHEWRQQLRLTEALPRLLAGDSVQVVARDLGYGSTRAFSSMFRRLLGETPRDY 247 >PA0163 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 265 Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 106/242 (43%), Positives = 140/242 (57%), Gaps = 1/242 (0%) Query: 22 RPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAVWLVADLEHE 81 RP+ A +G+ T H H QL YAI GV+ V AEG++ PP RA+W+ A LEHE Sbjct: 22 RPVYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAEGSFFAPPQRAIWIPAQLEHE 81 Query: 82 VRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPLDYAPATSDE-RLM 140 V ++R++++ DA P V V+PL REL + +P+DY S E RL+ Sbjct: 82 VVTSTRAEMRSLYIRGDACAWAPTRCRVLEVTPLARELIKSFCELPVDYPEGDSAESRLV 141 Query: 141 RVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLTSKTIHRLF 200 +VLLDQLR + + LPMPR+ RL R+C AL+ P T WA+RL + KT+ RLF Sbjct: 142 QVLLDQLRLLPEVAFSLPMPREPRLLRLCQALIDEPTQSLTMGDWAQRLGTSEKTLSRLF 201 Query: 201 ARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKHFGVPPNAF 260 RETGM + WRQ+ RLL +L L G V ALDSGY S SA+ A F+ FG P Sbjct: 202 QRETGMNYRLWRQRQRLLASLNALEAGDSVTGAALDSGYDSTSAYIAAFKGLFGFTPGEL 261 Query: 261 YR 262 +R Sbjct: 262 FR 263 >PA3830 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 270 Score = 178 bits (452), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 106/247 (42%), Positives = 141/247 (57%), Gaps = 1/247 (0%) Query: 16 DYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAVWLV 75 DY RP+ M +P+G H H R QL++A+ GV+ + W+VPP RAVW+ Sbjct: 18 DYQRVGRPLGVMAKTFPAGFVVAEHRHERAQLIHALSGVIELHVGRTLWLVPPQRAVWMP 77 Query: 76 ADLEHEVRMCGAVKIRTVFVDADAAP-NLPQASCVFAVSPLLRELFVAAMRVPLDYAPAT 134 A + H + G V++ TV+V + P P+ VSPLLREL V A +PL Y Sbjct: 78 AGMAHAMLARGEVRLHTVYVRPQSCPPEFPRVPRGVMVSPLLRELIVRAAGLPLLYDERG 137 Query: 135 SDERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLTSK 194 + RLM VLLD+L PL LP P D RL RVC AL+ P D E+WAR + +S+ Sbjct: 138 REGRLMAVLLDELEWSREQPLALPDPADRRLGRVCQALLENPADPRGLEEWARYVGASSR 197 Query: 195 TIHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKHFG 254 T+ RLF E G+TF WR Q RL AL RLA G V +A+D GY + SAF+AMFR+ G Sbjct: 198 TLARLFLSELGVTFVHWRHQVRLAAALPRLAAGEAVARIAVDLGYQTPSAFSAMFRRLTG 257 Query: 255 VPPNAFY 261 P+ ++ Sbjct: 258 STPSRYF 264