BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0068.p         (224 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr4286 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti         87   2e-17
AGc4899 [R] COG0730 Predicted permeases Atu Agrobacterium tumefa...    87   4e-17
RSp1268 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum     77   2e-14
Cgl2018 [R] COG0730 Predicted permeases Cgl Corynebacterium glut...    74   4e-13
ML0468 [R] COG0730 Predicted permeases Mle Mycobacterium leprae        73   5e-13

>mlr4286 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti
          Length = 250

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 70  FVLPVPALIAFATLLFALAPRIQGWTVGCERAAALSSTGASGAALGLACVYGGFFGAGLG 129
           F + VP L+  AT LFA  P ++        AA  S  G    A  +  +YGGFFGAG+G
Sbjct: 100 FRILVPWLLLGATALFAAGPWLKPAPKPGHEAAVGSLAGL--LAQFVTAIYGGFFGAGMG 157

Query: 130 VILTAVLSITEPNDIRAIKALKNLLATCVSLAATLIFVFQGAVRWPETLAMLLGAVIGGY 189
           V++ A L +T+  D   + ALKN+LA  V+  A ++FV  G V WP+ + M+ G  +GGY
Sbjct: 158 VMMLATLGLTQAGDYHRLNALKNMLAVVVAAVAIIVFVSGGVVAWPQAIVMIPGGALGGY 217

Query: 190 AGGFLIRILPAHIVRQFVIVAGALMTVIYAAR 221
           AG ++ + +P ++VR FV+  G  +   Y A+
Sbjct: 218 AGVWIAKRVPQNVVRGFVVAVGLFLAFYYFAK 249


>AGc4899 [R] COG0730 Predicted permeases Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 318

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 80/147 (54%), Gaps = 8/147 (5%)

Query: 74  VPALIAFATLLFALAPRIQGWTVGCERAAALSSTGA--SGAALGLACVYGGFFGAGLGVI 131
           VP L+  AT +FA  P ++       +A+A  S G   S    GLA +YGGFFGAG+G++
Sbjct: 174 VPWLLLAATAVFAAGPWLR------PKASAERSPGNLPSLVFQGLASIYGGFFGAGMGIM 227

Query: 132 LTAVLSITEPNDIRAIKALKNLLATCVSLAATLIFVFQGAVRWPETLAMLLGAVIGGYAG 191
           + A+L IT       + ALKNLL+  +++ A  IFV  G V W   L M   A +GGY G
Sbjct: 228 MLAILGITSGGSYHHLNALKNLLSVVIAVIAITIFVSGGVVSWWAALIMFPAAALGGYVG 287

Query: 192 GFLIRILPAHIVRQFVIVAGALMTVIY 218
               R +P  I+R  VI  G ++T  Y
Sbjct: 288 VHTARRVPQWIIRWLVIAVGLVLTAYY 314


>RSp1268 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum
          Length = 252

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 66  PERLFVLPVPALIAFATLLFALAPRIQGWTVGCERAAALSSTGASGAALGLACVYGGFFG 125
           P R F   VP L+   +L FA   +   W     R        A   A G   VYGG+FG
Sbjct: 96  PSRAFDFIVPWLLLVGSLAFAFGRQAGAWLRRRMRI----GRPALLLAQGALAVYGGYFG 151

Query: 126 AGLGVILTAVLSITEPNDIRAIKALKNLLATCVSLAATLIFVFQGAVRWPETLAMLLGAV 185
             +G+++ AV S+   +D+RA+ A + LL    ++ A L F     V WP+TL ML  A 
Sbjct: 152 GAVGIMMMAVWSLLGHDDLRALNASRTLLVGATNVVAVLCFAAAKLVWWPQTLVMLAAAA 211

Query: 186 IGGYAGGFLIRILPAHIVRQFVIVAGALMTVIYAARYW 223
           +GGY G  + R LP  +VR  +   G  MT +   R W
Sbjct: 212 LGGYLGAHVARRLPVPVVRLLISAFGFSMTALLFWRAW 249


>Cgl2018 [R] COG0730 Predicted permeases Cgl Corynebacterium glutamicum
          Length = 269

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 25/206 (12%)

Query: 27  RRDAH-HLXGKLPPPTRRTISYVAVAT-LGGTIGAGVLLLLPERLFVLPVPALIAFATLL 84
           RR+ H H+         +TI ++  A+ LGG  GA +LL     +F   +P LI F TLL
Sbjct: 69  RRELHAHV---------KTIRFLLPASILGGITGASLLLHFSADVFTAVIPWLIGFGTLL 119

Query: 85  FALAPRIQ---------GWTVGCERAAALSSTGASGAALG--LACVYGGFFGAGLGVILT 133
               P I+         G + G  +    S T    +  G  L  +YGG+F A  G++L 
Sbjct: 120 VIAGPSIKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLGMYGGYFSAAQGILLI 179

Query: 134 AVLSITEPNDIRAIKALKNLLATCVSLAATLIFVFQGA--VRWPETLAMLLGAVIGGYAG 191
           A+L IT    ++ + A+KNL    V+L A  +F+      + WP    + LG+ +GGY G
Sbjct: 180 ALLGITSTLQMQELNAIKNLTVAAVNLIAASVFIIISPELISWPTVALIALGSALGGYIG 239

Query: 192 GFLIRILPAHIVRQFVIVAGALMTVI 217
           G   R L   + R FV++ G + TVI
Sbjct: 240 GRYARRLRPSVFRAFVVIVG-ITTVI 264


>ML0468 [R] COG0730 Predicted permeases Mle Mycobacterium leprae
          Length = 260

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 54  GGTIGAGVLLLLPERLFVLPVPALIAFATLLFALAPRIQGWTVGCERAAALS----STGA 109
           G  +GA +LL LPE++F   VP L+  A +L    PRIQ WT  C   AA++    +T A
Sbjct: 84  GAALGAFLLLHLPEKVFTAIVPMLLVLALVLVVAGPRIQSWT-RCRAKAAVNRAEHTTPA 142

Query: 110 SGAALGL----ACVYGGFFGAGLGVILTAVLSITEPNDIRAIKALKNLLATCVSLAATL- 164
             A L L      VYGG+F AG G++L +++SI  P  ++ I A KNLL+  V+L A + 
Sbjct: 143 QMAMLALGTFAVSVYGGYFTAGQGILLVSLMSILLPESMQRINAAKNLLSMLVNLTAAVG 202

Query: 165 -IFVFQGAVRWPETLAMLLGAVIGGYAGGFLIRILPAHIVRQFVIVAG 211
              V    + W     +   +++GG  G    R L  +++R  ++  G
Sbjct: 203 YTLVAFDRINWSAAGMIAASSLVGGLVGTRYARRLSPNVLRATIVAIG 250