BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0039.p         (169 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2410 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu...   130   2e-30
mll0685 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti    129   3e-30
BMEII0671 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melit...   126   2e-29
SMc01359 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium m...   126   3e-29
RSc0121 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana...   121   6e-28

>AGc2410 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 550

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 2   RLLTPAIKYWTCKSAPGFLYEAMECLGGNGYVEEGILARHYRESPVNAIWEGSGNVMCLD 61
           R++TP +KYW CK AP  +YEAMECLGGNGYVEE  +ARHYRE+PVNAIWEGSGNVM LD
Sbjct: 381 RVMTPIVKYWCCKIAPALIYEAMECLGGNGYVEERPIARHYREAPVNAIWEGSGNVMALD 440

Query: 62  VLRALGREADAALAVLRALADETGGLPGAAEAVASIGQSFRRPDSERVARLAVEQLALLA 121
           VLR L R  D    V + L  + G        V     +    D E  ARL VEQ AL A
Sbjct: 441 VLRVLQRGKDLFDLVFQTLERDLGPAGKKTTDVLRAAIALAERD-EGAARLLVEQFALAA 499

Query: 122 ATAALNQV-SPKNAELFAATRLAERHAGMYGAVD 154
           A A L ++ + K A+ F  TRLA      YG +D
Sbjct: 500 AAAELCRLGAGKIADAFLETRLAGGWRHTYGMLD 533


>mll0685 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti
          Length = 548

 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 103/173 (59%), Gaps = 11/173 (6%)

Query: 2   RLLTPAIKYWTCKSAPGFLYEAMECLGGNGYVEEGILARHYRESPVNAIWEGSGNVMCLD 61
           R +TP +KYW CK AP  LYEAMECLGGNGYVEE  LAR+YRE+PVNAIWEGSGNVM LD
Sbjct: 379 RAMTPVVKYWVCKIAPPLLYEAMECLGGNGYVEEAPLARYYREAPVNAIWEGSGNVMALD 438

Query: 62  VLRALGREADAALAVLRALADETG----GLPGAAEAVASIGQSFRRPDSERVARLAVEQL 117
           VLR LGR       VL  +  + G    G  G  +A   +  +      E  ARL  EQL
Sbjct: 439 VLRVLGRAPGLFEEVLAGIDRDLGAGGRGTIGVLKAAMQVALT-----DEGSARLLTEQL 493

Query: 118 ALLAATAALNQV-SPKNAELFAATRLAERHAGMYGAVDLSDADQRALLARALP 169
           AL AA A L ++ + + A+ F  TRLA +    YG +D S  D R ++    P
Sbjct: 494 ALSAAAAELRRLGAGRIADAFVETRLAGQWRNTYGMID-SRHDARMIIDTLYP 545


>BMEII0671 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melitensis
          Length = 551

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 95/155 (61%), Gaps = 4/155 (2%)

Query: 2   RLLTPAIKYWTCKSAPGFLYEAMECLGGNGYVEEGILARHYRESPVNAIWEGSGNVMCLD 61
           R +TP +KYW CK AP  LYEAMECLGGNGY+E+G LAR YRE+PVNAIWEGSGNVM LD
Sbjct: 383 RSMTPVVKYWVCKIAPALLYEAMECLGGNGYIEDGNLARAYREAPVNAIWEGSGNVMALD 442

Query: 62  VLRALGREADAALAVLRALADETGGLPGAAEAVASIGQSFRRPDSER-VARLAVEQLALL 120
           V R L R       VL  ++ + G  P     +  +  + +  ++++ VARL  EQLA  
Sbjct: 443 VARVLSRAPALFDGVLDWISGQLG--PRGQGTIDVLRAALQLTETDQGVARLLTEQLAFA 500

Query: 121 AATAALNQVSPKN-AELFAATRLAERHAGMYGAVD 154
           AA A L Q+   + A+ F  TRL       YG +D
Sbjct: 501 AAAAELRQLGADDIADAFIETRLGGLWRTTYGMLD 535


>SMc01359 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium meliloti
          Length = 550

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 2   RLLTPAIKYWTCKSAPGFLYEAMECLGGNGYVEEGILARHYRESPVNAIWEGSGNVMCLD 61
           R++TP  KYW CK AP  +YEAMEC+GGNGYVEE  LARHYRE+PVNAIWEGSGNVM LD
Sbjct: 381 RIMTPVAKYWCCKIAPALIYEAMECMGGNGYVEERALARHYREAPVNAIWEGSGNVMALD 440

Query: 62  VLRALGREADAALAVLRALADETGGLPGAAEAVASIGQSFRRPDSERVARLAVEQLALLA 121
           VLR LGR  +    +   +  + G        V     S    D E  AR+ VEQLAL A
Sbjct: 441 VLRVLGRRKELFEQLFATIGRDLGPAGRKTIEVLRAAMSLCERD-EGAARMLVEQLALAA 499

Query: 122 ATAALNQV-SPKNAELFAATRLAERHAGMYGAVD 154
           A A L ++ + + A+ F  +RLA      YG +D
Sbjct: 500 AAAELYRLGAGRIADAFLESRLAAGWRSTYGMLD 533


>RSc0121 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum
          Length = 557

 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 100/171 (58%), Gaps = 3/171 (1%)

Query: 2   RLLTPAIKYWTCKSAPGFLYEAMECLGGNGYVEEGILARHYRESPVNAIWEGSGNVMCLD 61
           R++TPA K+W CK A     EAME  GGNGYVEEG +AR YRE+PVN+IWEGSGNVMCLD
Sbjct: 386 RIVTPAAKFWVCKRAIEATGEAMEVWGGNGYVEEGPMARLYREAPVNSIWEGSGNVMCLD 445

Query: 62  VLRALGREADAALAVLRALADETGGLPGAAEAVASIGQSFRRPD--SERVARLAVEQLAL 119
           VLRA+GR  D AL +++ + +   G       +A++     +     E  AR   + LAL
Sbjct: 446 VLRAIGRVPDDALRLVQDIGERARGHRAVRAELAALQAMLHQSGDIQEASARRIAQGLAL 505

Query: 120 LA-ATAALNQVSPKNAELFAATRLAERHAGMYGAVDLSDADQRALLARALP 169
            A A   L      +AE F A+R   +H  ++G ++ +  +  A L RA P
Sbjct: 506 TAQAALMLAHAHADDAERFIASRFHHQHGRVFGTLEGNAQELGAALQRAWP 556