BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0024.p         (157 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1607 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   164   9e-41
SMa1960 [K] COG1733 Predicted transcriptional regulators Sme Sin...   118   5e-27
mll2592 [K] COG1733 Predicted transcriptional regulators Mlo Mes...   103   1e-22
PA1374 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   101   7e-22
PA2713 [K] COG1733 Predicted transcriptional regulators Pae Pseu...    99   3e-21

>PA1607 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 146

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 1   VKRTSLAGDSCPVARALDVFGDWWSLLIIRDASLGRRRFGEFQASLGLAKNILATRLRTL 60
           VKRTS    SCPVAR LDV GD WS+LI+RDA  G  RFGEFQ SLGLAKNILA RLR L
Sbjct: 2   VKRTSHKQASCPVARPLDVIGDGWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNL 61

Query: 61  VERGILKTVPASDGSAYQEYVLTPKGHGIFPILVALRQWTEEFDEHPDEIATILVDRDNG 120
           VE G++  VPA  GS +QEY LT KG  +FP+LVA+RQW E++   PDE    LV+RD+G
Sbjct: 62  VEHGVMVAVPAESGS-HQEYRLTDKGRALFPLLVAIRQWGEDYFFAPDESHVRLVERDSG 120

Query: 121 KPVKKLALHSQDGRALGAADT 141
           +PV +L + + DG  L A DT
Sbjct: 121 QPVPRLQVRAGDGSPLAAEDT 141


>SMa1960 [K] COG1733 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 125

 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 26  LLIIRDASLGRRRFGEFQASLGLAKNILATRLRTLVERGILKTVPASDGSAYQEYVLTPK 85
           +LI+RDA  G  RFGEFQ SLG+A+NIL  RLRTLV+RGIL+ VP S+G A QEY LT  
Sbjct: 1   MLIVRDAFDGVTRFGEFQKSLGIARNILTARLRTLVDRGILEAVPISEGGARQEYRLTQM 60

Query: 86  GHGIFPILVALRQWTEEFDEHPDEIATILVDRDNGKPVKKLALHSQDGRALGAADTAL 143
           G  +FP++VALRQ+ E     P+E  + LV+R  G+P+ +L + ++DGR + + +T +
Sbjct: 61  GRDLFPVMVALRQFGERHLFAPNEKRSKLVERSTGRPI-RLDVLTEDGRPVNSEETVI 117


>mll2592 [K] COG1733 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 182

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 5/149 (3%)

Query: 1   VKRTSLAGDSCPVARALDVFGDWWSLLIIRDASLGRRRFGEFQASLGLAKNILATRLRTL 60
           V +TS     CP+AR+LD  G+WWS+L++RDA  G  RF +FQ SL +A NIL  RL +L
Sbjct: 2   VAKTSFETRPCPIARSLDDVGEWWSILLLRDAFQGLTRFDQFQKSLEIAPNILTRRLNSL 61

Query: 61  VERGILKTVPASDGSAYQEYVLTPKGHGIFPILVALRQWTEEFDEH--PDEIATILVDRD 118
           VERG+ +     +     EYVLT K     P+L++L  W    ++H  P+  + ++VD+ 
Sbjct: 62  VERGLFEKRAYCERPLRHEYVLTAKARDFRPVLLSLLAWG---NKHLAPEGPSLVVVDKT 118

Query: 119 NGKPVKKLALHSQDGRALGAADTALKPRP 147
           +G+  + + +  Q GR L   D  +   P
Sbjct: 119 DGRWAEPVLVDRQTGRELDGGDFTMATAP 147


>PA1374 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 1   VKRTSLAGDSCPVARALDVFGDWWSLLIIRDASLGRRRFGEFQASLGLAKNILATRLRTL 60
           ++R + A   CP+AR+L+  G+WWS+LI+RDA  G RRF EF  SL +A N+L  RL  L
Sbjct: 1   MQRKTFADAECPIARSLERVGEWWSILIMRDALQGLRRFDEFSRSLDIAPNMLTRRLNAL 60

Query: 61  VERGILKTVPASDGSAYQEYVLTPKGHGIFPILVALRQW-TEEFDEHPDEIATILVDRDN 119
           VE G+L+  P S      +YV T KG     +L+A   W    + E    +   LV+R +
Sbjct: 61  VEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLMAFVAWGNRHYAEEGQSVQ--LVERTS 118

Query: 120 GKPVKKLALHSQDGRALGAADTALKPRPA 148
           G+PV+       DGR +      ++  PA
Sbjct: 119 GRPVRSFMAALADGRTVPLEQCTVQAGPA 147


>PA2713 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 159

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 78/148 (52%)

Query: 1   VKRTSLAGDSCPVARALDVFGDWWSLLIIRDASLGRRRFGEFQASLGLAKNILATRLRTL 60
           +K   +    C +AR+L + GD W+LLI+R+  LG RRF EFQASLG+ + +LA RL  L
Sbjct: 1   MKWQEVGETPCSMARSLAILGDRWTLLILRNCFLGMRRFDEFQASLGVTRQVLADRLSRL 60

Query: 61  VERGILKTVPASDGSAYQEYVLTPKGHGIFPILVALRQWTEEFDEHPDEIATILVDRDNG 120
           VE G LK VP  +     EY LT  GH + P+L+AL  W + + +         V +  G
Sbjct: 61  VEAGALKKVPYQERPPRYEYRLTEMGHDLHPVLLALANWGDRWLDEGRGAPVEYVHKACG 120

Query: 121 KPVKKLALHSQDGRALGAADTALKPRPA 148
              +   +  + G  +G+ D    P P 
Sbjct: 121 HKFRPTMVCPECGEPVGSRDVTAVPGPG 148