BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0026.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc1731 [K] COG1733 Predicted transcriptional regulators Atu Agr...   146   1e-35
ECs5189 [K] COG1733 Predicted transcriptional regulators Ecs Esc...   112   2e-25
ytfH [K] COG1733 Predicted transcriptional regulators Eco Escher...   112   2e-25
ZytfH [K] COG1733 Predicted transcriptional regulators EcZ Esche...   112   2e-25
CC3368 Non COG                                                        108   2e-24

>AGc1731 [K] COG1733 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 190

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 85/112 (75%)

Query: 9   DAYAANCPTRQILDRVGDKWAVLILLLLRGEPMRFNQLRRAIEGISQKMLSQVLKSLERD 68
           D Y   CPTR +LDR+ DKWA+LIL  LR + +RFN LRR I+GISQK+LSQ LK LERD
Sbjct: 74  DVYEDRCPTRMVLDRIADKWALLILDKLRVDAVRFNLLRREIKGISQKVLSQTLKKLERD 133

Query: 69  GLLRRRAIATVPVTVEYSITPLGSTLAEAVDPLRDWAEQNLKDVLAAQRRYD 120
           GL+ R+A  TVPVTVEYS+TPLG TL E V  L  WAE N++ V+AAQR YD
Sbjct: 134 GLISRQAFPTVPVTVEYSLTPLGRTLTETVAALAHWAEGNIEAVMAAQRAYD 185


>ECs5189 [K] COG1733 Predicted transcriptional regulators Ecs Escherichia
           coli O157:H7
          Length = 156

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%)

Query: 9   DAYAANCPTRQILDRVGDKWAVLILLLLRGEPMRFNQLRRAIEGISQKMLSQVLKSLERD 68
           + +A  CP+R++L  V  +W VLIL+ LR    RF+ LRR I G+S+KML+Q L++LE+D
Sbjct: 44  NLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQD 103

Query: 69  GLLRRRAIATVPVTVEYSITPLGSTLAEAVDPLRDWAEQNLKDVLA 114
           G L R A   VP  VEYS+TPLG  ++E V  L DW E NL +VLA
Sbjct: 104 GFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLA 149


>ytfH [K] COG1733 Predicted transcriptional regulators Eco Escherichia
           coli K12
          Length = 156

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%)

Query: 9   DAYAANCPTRQILDRVGDKWAVLILLLLRGEPMRFNQLRRAIEGISQKMLSQVLKSLERD 68
           + +A  CP+R++L  V  +W VLIL+ LR    RF+ LRR I G+S+KML+Q L++LE+D
Sbjct: 44  NLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQD 103

Query: 69  GLLRRRAIATVPVTVEYSITPLGSTLAEAVDPLRDWAEQNLKDVLA 114
           G L R A   VP  VEYS+TPLG  ++E V  L DW E NL +VLA
Sbjct: 104 GFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLA 149


>ZytfH [K] COG1733 Predicted transcriptional regulators EcZ Escherichia
           coli O157:H7 EDL933
          Length = 156

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%)

Query: 9   DAYAANCPTRQILDRVGDKWAVLILLLLRGEPMRFNQLRRAIEGISQKMLSQVLKSLERD 68
           + +A  CP+R++L  V  +W VLIL+ LR    RF+ LRR I G+S+KML+Q L++LE+D
Sbjct: 44  NLFAEQCPSREVLKHVTSRWGVLILVALREGXHRFSDLRRKIGGVSEKMLAQSLQALEQD 103

Query: 69  GLLRRRAIATVPVTVEYSITPLGSTLAEAVDPLRDWAEQNLKDVLA 114
           G L R A   VP  VEYS+TPLG  ++E V  L DW E NL +VLA
Sbjct: 104 GFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLA 149


>CC3368 Non COG
          Length = 148

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 74/108 (68%)

Query: 6   LKPDAYAANCPTRQILDRVGDKWAVLILLLLRGEPMRFNQLRRAIEGISQKMLSQVLKSL 65
           L+ +  AA CP+R++L+ V  +W VL+L+ L    +RF+QL+R I G+S++ML+Q LK+L
Sbjct: 24  LQGNLMAAACPSREVLNHVTSRWGVLVLMALETRTLRFSQLKRQIGGVSERMLAQTLKAL 83

Query: 66  ERDGLLRRRAIATVPVTVEYSITPLGSTLAEAVDPLRDWAEQNLKDVL 113
           E DG + R+A   VP  VEYS+TPLG  +AE V  L DW E NL  +L
Sbjct: 84  EGDGFVLRQAFEVVPPHVEYSLTPLGLEVAERVRGLADWIEVNLPRIL 131