BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0182.0088.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3225 [K] COG3609 Predicted transcriptional regulators contain...    79   3e-15
Z0509 [K] COG3609 Predicted transcriptional regulators containin...    65   5e-11
ECs0461 [K] COG3609 Predicted transcriptional regulators contain...    65   5e-11
AGc2413 [K] COG3609 Predicted transcriptional regulators contain...    63   1e-10
Rv1960c [K] COG3609 Predicted transcriptional regulators contain...    60   2e-09

>RSc3225 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Rso Ralstonia
          solanacearum
          Length = 88

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 1  MATSYTVGKHYESFIKDLVDSGRYAAASEVMREGLRLVEEREERRKAKLEALRTAIQEGL 60
          M TS  +G H+E+FI+D V SGR+   SEV+R GLRL+EE E+RR+ +L+ALR  I  G 
Sbjct: 1  MPTSVALGNHFETFIRDQVQSGRFNNVSEVVRAGLRLLEESEQRRQLELQALRAEIAAGK 60

Query: 61 ESGPAEP 67
           SGPA+P
Sbjct: 61 ASGPAKP 67


>Z0509 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain EcZ Escherichia coli
          O157:H7 EDL933
          Length = 80

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 4/63 (6%)

Query: 3  TSYTVGKHYESFIKDLVDSGRYAAASEVMREGLRLVEEREERRKAKLEALRTAIQEGLES 62
          TS +VG+  +SFI  +V SGRY +ASEVMR  LRL+E++E R     EA+R A+ EGLES
Sbjct: 5  TSVSVGEQLDSFITRMVQSGRYGSASEVMRSALRLLEQQESRD----EAVRNAVIEGLES 60

Query: 63 GPA 65
          G +
Sbjct: 61 GES 63


>ECs0461 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Ecs Escherichia coli
          O157:H7
          Length = 80

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 4/63 (6%)

Query: 3  TSYTVGKHYESFIKDLVDSGRYAAASEVMREGLRLVEEREERRKAKLEALRTAIQEGLES 62
          TS +VG+  +SFI  +V SGRY +ASEVMR  LRL+E++E R     EA+R A+ EGLES
Sbjct: 5  TSVSVGEQLDSFITRMVQSGRYGSASEVMRSALRLLEQQESRD----EAVRNAVIEGLES 60

Query: 63 GPA 65
          G +
Sbjct: 61 GES 63


>AGc2413 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 102

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 4  SYTVGKHYESFIKDLVDSGRYAAASEVMREGLRLVEEREERRKAKLEALRTAIQEG---L 60
          +  + +H+E  I DLV SGRY  ASEV+REGLRL+E RE     +LE L+ A Q+G   L
Sbjct: 9  NVVLTQHHEEIIDDLVKSGRYQNASEVLREGLRLIERRERLEATRLETLKVAAQQGFCDL 68

Query: 61 ESGPAEPFEPGELVEQIKARGRE 83
          + G         L + I A GRE
Sbjct: 69 DQGRYIDVSDDALDDFISAFGRE 91


>Rv1960c [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Mtu Mycobacterium
          tuberculosis H37Rv
          Length = 83

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 3  TSYTVGKHYESFIKDLVDSGRYAAASEVMREGLRLVEEREERRKAKLEALRTAIQEGLES 62
          TS+ + +HY +FI   + +GRY +ASEV+R  LRL+E+RE     +L ALR A++ G  S
Sbjct: 5  TSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRE----TQLRALREALEAGERS 60

Query: 63 GPAEPFE 69
          G + PF+
Sbjct: 61 GSSTPFD 67