BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0182.0020.p         (97 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1566 [C] COG2010 Cytochrome c, mono- and diheme variants Bme...   114   8e-26
mlr6414 [C] COG2010 Cytochrome c, mono- and diheme variants Mlo ...   108   4e-24
mll6628 [C] COG2010 Cytochrome c, mono- and diheme variants Mlo ...   105   3e-23
AGc2829 [C] COG2010 Cytochrome c, mono- and diheme variants Atu ...    99   2e-21
CC1404 Non COG                                                         98   4e-21

>BMEI1566 [C] COG2010 Cytochrome c, mono- and diheme variants Bme Brucella
           melitensis
          Length = 299

 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 1   VRSLSGLTTAAKFDAAAGTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLV 60
           V SLSG           G K+FAENCAVCHG +AKG +  GAPNLTD IWLYGS ED ++
Sbjct: 204 VVSLSGTPHDPSM-VPEGQKVFAENCAVCHGADAKGLREFGAPNLTDAIWLYGSGEDAII 262

Query: 61  ETISYGRAGIMPAWSGRLDPITVRALAVYVHSLGGGQ 97
             +S+ + G+MPAW  RL   TV+ LA++VHSLGGG+
Sbjct: 263 RQVSHPKHGVMPAWEARLGDATVKQLAIFVHSLGGGE 299



 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 12  KFDAAAGTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLVETISYG----- 66
           ++  A G   F  NC  CHG  A+G  A G PNL D  WL+G   D +V TI +G     
Sbjct: 119 QYAIAGGAAAFRVNCVQCHGSGAQG--APGYPNLNDDDWLWGGSIDDIVTTIRHGVRSPD 176

Query: 67  ----RAGIMPAWSGRLDPITVRALAVYVHSLGG 95
               R   M A++  L+P  +R +A YV SL G
Sbjct: 177 DPETRLSEMTAFADVLEPQQIRDVAAYVVSLSG 209


>mlr6414 [C] COG2010 Cytochrome c, mono- and diheme variants Mlo
           Mesorhizobium loti
          Length = 287

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 1   VRSLSGLTTAAKFDAAAGTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLV 60
           V SLSG    A      G K+F ENC  CHG+NAKGN+ LGAPNLTD IWLY   E  + 
Sbjct: 192 VASLSGKVQDASL-IEPGAKVFGENCVACHGDNAKGNKELGAPNLTDAIWLYAPGETAIA 250

Query: 61  ETISYGRAGIMPAWSGRLDPITVRALAVYVHSLGGGQ 97
             +   + G+MPAW GRL    V+ LAVYVHSLGGG+
Sbjct: 251 VQVRAPKHGVMPAWIGRLGETKVKELAVYVHSLGGGE 287


>mll6628 [C] COG2010 Cytochrome c, mono- and diheme variants Mlo
           Mesorhizobium loti
          Length = 287

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 1   VRSLSGLTTAAKFDAAAGTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLV 60
           V SLSG           G K+FAENC  CHG NAKGN+  GAP+LTD IWLYGS E  + 
Sbjct: 192 VASLSGKVQDTSL-VEPGAKVFAENCVACHGANAKGNREFGAPDLTDAIWLYGSGEAAIA 250

Query: 61  ETISYGRAGIMPAWSGRLDPITVRALAVYVHSLGGGQ 97
             +   + G+MPAW  RL    V+ LAVYVHSLGGG+
Sbjct: 251 AQVRAPKHGVMPAWIDRLGETRVKELAVYVHSLGGGE 287



 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 11/93 (11%)

Query: 12  KFDAAAGTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLVETISYG----- 66
           +F  AAG   F  NC  CHG  A+G++  G PNL D  WL+G   D + +TI++G     
Sbjct: 107 EFAVAAGGATFKVNCVQCHGSGAQGSK--GFPNLNDDDWLWGGKADQIQQTITHGIRFAS 164

Query: 67  ----RAGIMPAWSGRLDPITVRALAVYVHSLGG 95
               R   MPA+   + P  +  ++ YV SL G
Sbjct: 165 DPDTRISEMPAFGDIITPEQIAQVSAYVASLSG 197


>AGc2829 [C] COG2010 Cytochrome c, mono- and diheme variants Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 287

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 18  GTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLVETISYGRAGIMPAWSGR 77
           G ++FA+NCA CHGE+AKGN+  GAPNL D IWL    E+ +V  I   + G+MPAW  R
Sbjct: 208 GKQLFADNCASCHGEDAKGNREFGAPNLADAIWLKAHGEEGIVAQIRSPKHGVMPAWGER 267

Query: 78  LDPITVRALAVYVHSLGGGQ 97
           L   TV+ LA++VHSLGGG+
Sbjct: 268 LGDTTVKQLAIFVHSLGGGE 287



 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 9   TAAKFDAAAGTKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLVETISYG-- 66
           T  +F  + G   F  NC  CHG  A+G Q  G PNL D  W++G   D +  T+ +G  
Sbjct: 104 TLMQFALSGGAAAFKVNCIQCHGSGAEGGQ--GYPNLNDDDWMWGGSVDDIYTTVKHGIR 161

Query: 67  -------RAGIMPAWSGRLDPITVRALAVYVHSLGG 95
                  RA  MPA+   L    +RA+A YV SL G
Sbjct: 162 FADDADTRASEMPAFGDILKSDEIRAVAAYVVSLTG 197


>CC1404 Non COG
          Length = 288

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 54/79 (68%)

Query: 19  TKIFAENCAVCHGENAKGNQALGAPNLTDRIWLYGSDEDTLVETISYGRAGIMPAWSGRL 78
           T +F   C+ CHG   +GNQ LGAPNLTD  WL+G+D  ++   I  G  G+MPAWSGRL
Sbjct: 210 TPLFEAQCSACHGPQGQGNQQLGAPNLTDADWLFGADRASIRGQIYAGNGGVMPAWSGRL 269

Query: 79  DPITVRALAVYVHSLGGGQ 97
            P T++AL VY+HS  GGQ
Sbjct: 270 SPETIKALTVYIHSNAGGQ 288