BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0076.p (588 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4290 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 135 3e-31 CC0593 [NT] COG0840 Methyl-accepting chemotaxis protein Ccr Caul... 120 1e-26 CAC0433 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clo... 99 2e-20 VCA1056_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch V... 96 2e-19 PA2867 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 93 2e-18 >PA4290 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 538 Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 5/152 (3%) Query: 436 FENGLASGAIAIADMFDTDYVEIAGTNPVQYRTKMLDWAERTLPAFQEAFLARDKRMAFC 495 FE + SG I + D+FD Y + T P +YRT+ + ++ LP QE L R++ + F Sbjct: 369 FEEDVRSGRIDLDDLFDRSYQPLPNTQPTKYRTRFDSYTDQVLPGIQEQLLERNRNLVFA 428 Query: 496 VMIDQNGYLPVHNKLYSQPQRPGDEAYNTANSRNRRIFNDAAGLAAGRNQRAYLIQTYAR 555 + GY+P HN+ ++ P GD + SR++R+FND G+ G +Q+ L+QTY R Sbjct: 429 IACTPEGYVPTHNRAFAHPP-SGDPQTDALRSRSKRLFNDRTGIRCGSHQQPLLLQTYTR 487 Query: 556 DMGGGNTVMMREIDVPVRVRGRHWGGFRTAYK 587 D G +M ++ VP+ V G+HWGG R Y+ Sbjct: 488 DTGE----LMHDLSVPIFVHGKHWGGLRLGYR 515 Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 14/122 (11%) Query: 133 AAREATANVDRLRESSAAIGNVVNLIAQIARQTTLLALNSTIEAARAGAAGKGFAVVATE 192 A+REA ++ L + S I V +I IA QT LLALN+ IEAARAG G+GFAVVA E Sbjct: 162 ASREA---IEALNQRSEDIQRVTLVIQGIASQTNLLALNAAIEAARAGEHGRGFAVVAEE 218 Query: 193 VKALAVQTQSATEEITRKIEALQKDATGSADAVHRISQAIEKIRPVFENVNGAVAEQNEI 252 V+ LA +T ATEE+ + + +Q+ + S+ +E+IR + E + V Q E+ Sbjct: 219 VRGLAGRTAEATEEVGQMVAEIQR----------QTSEVVEQIRQLSEELGEGVG-QVEL 267 Query: 253 TG 254 TG Sbjct: 268 TG 269 >CC0593 [NT] COG0840 Methyl-accepting chemotaxis protein Ccr Caulobacter vibrioides Length = 599 Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 115/208 (55%) Query: 107 DRFTHSAEGIGAQVRSASQLADDAAAAAREATANVDRLRESSAAIGNVVNLIAQIARQTT 166 D S I QV ++ +A A AR + +DR+ S+ IG VVNLI++IA QT Sbjct: 387 DEMGKSVNEIAHQVNHSTSIAAQAVDRARRTSETIDRMSVSAQKIGEVVNLISEIAGQTN 446 Query: 167 LLALNSTIEAARAGAAGKGFAVVATEVKALAVQTQSATEEITRKIEALQKDATGSADAVH 226 LLALN+TIE+ARAG AG+GFAVVA EVK LA QT ATE+I +I +Q + S A+ Sbjct: 447 LLALNATIESARAGEAGRGFAVVAAEVKGLATQTAKATEDIAAQIHEIQNITSDSVSAIS 506 Query: 227 RISQAIEKIRPVFENVNGAVAEQNEITGEMGRNAASASHFIVSVGTSAGEIDSATREAAA 286 I + I+++ V +N AV EQ+ T E+ RN + A++ V + ++ ++ + Sbjct: 507 EIQRIIDEMNAVSTAINAAVEEQSAATREIARNTSEAANGAQDVSRNISDVLHGAQQTGS 566 Query: 287 HGDNVAKAGKAVTAFAQKLKARCAVLLR 314 V A + + A L+ R L+ Sbjct: 567 ASHQVVSASQELGRQAAALRDRVDTFLK 594 >CAC0433 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clostridium acetobutylicum Length = 441 Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 30/241 (12%) Query: 41 SSKEILELLELELGAMIRQLERAASSVADGAEATAAKLATIRARTNALTGRSSDAQGTAT 100 SSK +LE + L +I + +++AS VA ++ A K A+I+A+ + + AT Sbjct: 140 SSKTVLET-SIALKNLIDKTDKSASDVALATDSIA-KAASIQAK------NAEECYNKAT 191 Query: 101 TFSQAADRFTHSAEGIGAQVRSASQLAD----------DAAAAAREATANVD----RLRE 146 + S+ +R E + + S ++L D D + A EAT+ V+ ++ E Sbjct: 192 SLSEKINRVLSGTEVMNVEADSFNELIDNGLKTINILNDQSEKALEATSKVNEIVLKVNE 251 Query: 147 SSAAIGNVVNLIAQIARQTTLLALNSTIEAARAGAAGKGFAVVATEVKALAVQTQSATEE 206 +S IGN+ ++QIA QT LLALN+ IEAARAG +GKGF+VVA EV+ LA Q + E Sbjct: 252 NSNDIGNITKTVSQIAEQTNLLALNAAIEAARAGESGKGFSVVAEEVRKLAEQVTESIGE 311 Query: 207 ITRKIEALQKDATGSADAVHRISQAIEK-------IRPVFENVNGAVAEQNEITGEMGRN 259 I I +Q ++ + A+ S + K + +F +++ + E N + GE+ +N Sbjct: 312 IESLINDIQLHSSEAVSAISEASSIVAKENSSSIDTKKIFNDISDVLFEMNAVVGEI-KN 370 Query: 260 A 260 A Sbjct: 371 A 371 >VCA1056_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 334 Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 25/240 (10%) Query: 65 SSVADGAEATAAKLATIRARTNALTGRSSDAQGTATTFSQAADRFTHSAEGIGAQVRSAS 124 +SV++ E T + + + + ++T S AQ A TF Q A++ H +G ++ Sbjct: 82 NSVSEQHERTDSVVTAVNEMSASITEVSEFAQ-RAATFVQEANQKGHGGVSVGNELARDM 140 Query: 125 QLADDAAAAAREATANVDRLRESSAAIGNVVNLIAQIARQTTLLALNSTIEAARAGAAGK 184 + A+A EA A RL S +I +V+++I IA QT LLALN+ IEAARAG G+ Sbjct: 141 TSINQQMASAVEAIA---RLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGR 197 Query: 185 GFAVVATEVKALAVQTQSATEEITRKIEALQKDATGSADAV--------------HRISQ 230 GFAVVA EV+ LA +TQ++TEEI KI+ LQK+ + + H + Sbjct: 198 GFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTD 257 Query: 231 AIEKIRPVFENVN-------GAVAEQNEITGEMGRNAASASHFIVSVGTSAGEIDSATRE 283 +++I + +N A +Q +T E+ N S S SV GE+++ E Sbjct: 258 MLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNE 317 >PA2867 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 490 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 25/187 (13%) Query: 63 AASSVADGAEATAAKLATIRARTNALTGRSSDAQGTATTFSQAADRFTHSAEGIGAQVRS 122 AA+ + +GA+A A + +R + G+ S+ TAT ++ + H A+ A R Sbjct: 218 AATKLDEGAQALARSMGQVR---QGMLGQQSETDQTATAINEMSTTVFHIAQH-AADTRD 273 Query: 123 ASQLADDAAAAAREATANVD------------------RLRESSAAIGNVVNLIAQIARQ 164 SQ AD A A ++A + V +L E S I VVN+I IA Q Sbjct: 274 QSQEADRLAGAGQQAVSRVSASIAGLSQGVQDTAEMIQKLAEDSQKISGVVNVIHGIAEQ 333 Query: 165 TTLLALNSTIEAARAGAAGKGFAVVATEVKALAVQTQSATEEITRKIEALQKDATGSADA 224 T LLALN+ IEAARAG G+GFAVVA EV+ LA + Q +T+EIT+ I ALQ +G+ DA Sbjct: 334 TNLLALNAAIEAARAGEMGRGFAVVADEVRNLARRVQDSTDEITQMILALQ---SGTRDA 390 Query: 225 VHRISQA 231 V + ++ Sbjct: 391 VEFMQES 397