BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0015.p         (184 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa0155 [G] COG3090 TRAP-type C4-dicarboxylate transport system,...    70   3e-12

>SMa0155 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small
           permease component Sme Sinorhizobium meliloti
          Length = 189

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%)

Query: 27  RALSICNNIIVVFAALALVAACVILSYSVLGRALFHSPNYWQDEAAVFLLVGATFMTSAY 86
           RA+   +  +   A   L+AA +++   ++ R +F     WQ +  VF    A F+ + Y
Sbjct: 7   RAVGNASRGLAAVATALLIAAMLVVCQMIMQRYVFRQATIWQTDFVVFSATAAMFLGAPY 66

Query: 87  VQSQRGHVSIEAFVGLLSARANAIRLWLVDVASFAFCAFFAWKSWTLAHEAYVDGQVSNS 146
           V  + GHV I+    ++  R   +   +  +    FCA     +W   H+A+      +S
Sbjct: 67  VLLKGGHVGIDVVEMVVGERTRYVLRIIAGLLGLLFCAVMLIATWIQFHDAWAGNWKHSS 126

Query: 147 MWSPPLAIPYVLMALGMTLLCVQILLQIIIPLTGGA 182
           +W+PPL +P   + +   +LC+Q + QI+  LT  A
Sbjct: 127 VWAPPLWVPLAALPVSFAMLCLQYVAQILTLLTAPA 162