BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0014.p         (153 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa0151 [G] COG1593 TRAP-type C4-dicarboxylate transport system,...   106   2e-23
PA5169 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ...    75   7e-14
VC1927 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ...    74   2e-13
PM1653 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ...    72   4e-13
PM0273 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ...    72   5e-13

>SMa0151 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large
           permease component Sme Sinorhizobium meliloti
          Length = 866

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 65/81 (80%)

Query: 56  MASITLLSIPLFILKGAAIGKSRAGQDLYSALHAWLHRVPGGLGVANVFACALFAAMAGS 115
           +A++  +SIP+F+L GAA+  S AG DLY++L  WL+R+PGGL ++N+ ACA+F+ M GS
Sbjct: 5   IANLAYVSIPMFVLMGAAVASSPAGSDLYTSLDRWLNRIPGGLILSNIGACAIFSGMTGS 64

Query: 116 SPATCSAIGSAGIPEMRKRGY 136
           SPATC+AIG  GIPEM +RGY
Sbjct: 65  SPATCAAIGKMGIPEMMRRGY 85


>PA5169 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large
           permease component Pae Pseudomonas aeruginosa
          Length = 427

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 18  MFSGMPIAFALGAVAVVFMAIYMPAASLDTVTQNVYEEMASITLLSIPLFILKGAAIGKS 77
           MF G+PIA +LG    + + ++ P  S+ ++   ++E     TLL+IP F+L GA +   
Sbjct: 14  MFIGVPIAVSLGLSGALTILLFSPD-SVRSLAIKLFETSEHYTLLAIPFFLLSGAFMTTG 72

Query: 78  RAGQDLYSALHAWLHRVPGGLGVANVFACALFAAMAGSSPATCSAIGSAGIPEMRKRGY 136
              + L    +A +  + GGL +A V AC LFAA++GSSPAT +A+GS  I  M + GY
Sbjct: 73  GVARRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAIAGMVRSGY 131


>VC1927 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large
           permease component Vch Vibrio cholerae
          Length = 453

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 8/129 (6%)

Query: 18  MFSGMPIAFALGAVAVVFMAIYMPAASLDTVTQNVYEEMA-SITLLSIPLFILKGAAIGK 76
           M  G+PIA +LG  +++F+ ++   ASL +V Q ++   A   TLL+IP FIL    +  
Sbjct: 14  MIVGVPIAISLGLSSILFL-LWHSDASLASVAQTLFNAFAGHYTLLAIPFFILASTFMST 72

Query: 77  SRAGQDLYS---ALHAWLHRVPGGLGVANVFACALFAAMAGSSPATCSAIGSAGIPEMRK 133
               + +     A+  W     GGL +A+V AC +FAA++GSSPAT  AIGS  I  M K
Sbjct: 73  GGVAKRIIRFAIAMVGWFR---GGLAIASVVACMMFAALSGSSPATVVAIGSIVIAGMVK 129

Query: 134 RGYSGXPAA 142
            GYS   AA
Sbjct: 130 NGYSKEFAA 138


>PM1653 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large
           permease component Pmu Pasteurella multocida
          Length = 426

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 70/117 (59%)

Query: 21  GMPIAFALGAVAVVFMAIYMPAASLDTVTQNVYEEMASITLLSIPLFILKGAAIGKSRAG 80
            +PIA A+G V+++ M I     ++  V  +V++  ++ +LL+IPLFIL GA +      
Sbjct: 17  NVPIAVAIGIVSLIGMLITNSFDAIYNVALSVFDGASNFSLLAIPLFILAGALMNTGGIS 76

Query: 81  QDLYSALHAWLHRVPGGLGVANVFACALFAAMAGSSPATCSAIGSAGIPEMRKRGYS 137
             L + ++A +  V GGL + NV    +FA ++GSS A  +A+GS  IP M+KRGY 
Sbjct: 77  VRLINFVNALIGFVRGGLAMVNVGVSMIFAEISGSSVADVAALGSILIPAMKKRGYK 133


>PM0273 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large
           permease component Pmu Pasteurella multocida
          Length = 427

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 21  GMPIAFALGAVAVVFMAIYMPAASLDTVTQNVYEEMASITLLSIPLFILKGAAIGKSRAG 80
           G+PIA +LG    + + ++    SL ++   ++E     TLL+IP F+L GA +      
Sbjct: 17  GVPIAISLGLSGAIVIMLF-SQDSLSSLAIKLFETSEHYTLLAIPFFLLAGAFMTTGGVA 75

Query: 81  QDLYSALHAWLHRVPGGLGVANVFACALFAAMAGSSPATCSAIGSAGIPEMRKRGY 136
           + L    +A +  + GGL +A+V +C LFAA++GSSPAT +A+GS  I  M + GY
Sbjct: 76  KRLIDFANATVGHIRGGLAIASVMSCMLFAALSGSSPATVAAVGSIAIAGMVRSGY 131