BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0179.0006.p (215 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02636 [S] COG1376 Uncharacterized protein conserved in bacter... 238 6e-63 AGc4244 [S] COG1376 Uncharacterized protein conserved in bacteri... 222 5e-58 SMc01200 [S] COG1376 Uncharacterized protein conserved in bacter... 191 1e-48 mlr5313 Non COG 188 6e-48 BMEI0848 [S] COG1376 Uncharacterized protein conserved in bacter... 187 1e-47 >SMc02636 [S] COG1376 Uncharacterized protein conserved in bacteria Sme Sinorhizobium meliloti Length = 201 Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 118/182 (64%), Positives = 135/182 (74%) Query: 34 YAQLVDGVYTLPAVDISGVDPAMLRQRVDYTTNEPVGTIVIDTAAHQLYLVEGDGKAMRY 93 Y + + LPA DIS V+P LRQ+V Y T+EP GT+VIDT LYLV+G G A+RY Sbjct: 2 YGAKSEEKFPLPATDISKVEPRFLRQQVPYVTHEPPGTVVIDTENRFLYLVQGGGMALRY 61 Query: 94 GIGVGKDGLAFAGTATIRRKAEWPHWTPTKNMMNREPARYGHLASGMAGGLGNPLGPRAL 153 GIGVGK GL F G A + RKAEWP WTPT +M+ REP RYG LA GM GL NPLGPRAL Sbjct: 62 GIGVGKAGLEFEGEARVGRKAEWPRWTPTSDMVAREPERYGPLAGGMDPGLRNPLGPRAL 121 Query: 154 YLFQGERDTMFRIHGTTEPETIGRAVSSGCIRLINQDIIDLYSRVKIGSRVVVIQGGRAV 213 YL+QG RDT+FRIHGTTE +IG+AVSSGCIRL N DIIDLYSRV GSRVVV+Q + Sbjct: 122 YLYQGNRDTLFRIHGTTEAWSIGKAVSSGCIRLFNPDIIDLYSRVPEGSRVVVLQAEPPM 181 Query: 214 SS 215 S Sbjct: 182 SQ 183 >AGc4244 [S] COG1376 Uncharacterized protein conserved in bacteria Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 205 Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 111/207 (53%), Positives = 143/207 (69%), Gaps = 7/207 (3%) Query: 2 RFSVFGAMAIVLSGCASRSGLVEADIISTPSEYAQLVDGVYTLPAVDISGVDPAMLRQRV 61 R V + + L+GCA +G+ E + YA + + LPA+ + V P + RQ V Sbjct: 5 RRGVLFGLPLFLAGCAH-TGIGEQRL-----NYAAKPEEKFPLPAMHLDKVKPELRRQEV 58 Query: 62 DYTTNEPVGTIVIDTAAHQLYLVEGDGKAMRYGIGVGKDGLAFAGTATIRRKAEWPHWTP 121 Y T+ P GT+V+DT A +LY V G+G+AMRYG+GVG+ GLA G A I RK+EWP WTP Sbjct: 59 TYDTSHPAGTVVVDTPARRLYYVMGEGRAMRYGVGVGRQGLALKGDAYIGRKSEWPSWTP 118 Query: 122 TKNMMNREPARYGHLASGMAGGLGNPLGPRALYLFQGERDTMFRIHGTTEPETIGRAVSS 181 T NMM R+P R A GM GG NPLG RALYL++G DTMFR+HGT +P++IG A+SS Sbjct: 119 TANMMRRDP-RNLKFAGGMPGGPNNPLGARALYLYRGGNDTMFRLHGTNQPQSIGHAMSS 177 Query: 182 GCIRLINQDIIDLYSRVKIGSRVVVIQ 208 GCIR++N DIIDLYSRV +GSRVVV+Q Sbjct: 178 GCIRMLNHDIIDLYSRVPVGSRVVVLQ 204 >SMc01200 [S] COG1376 Uncharacterized protein conserved in bacteria Sme Sinorhizobium meliloti Length = 193 Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/206 (50%), Positives = 127/206 (61%), Gaps = 21/206 (10%) Query: 2 RFSVFGAMAIVLSGCASRSGLVEADIISTPSEYAQLVDGVYTLPAVDISGVDPAMLRQRV 61 R V G++A+ SGC+S L AD P + +DP RQ V Sbjct: 9 RVLVLGSLALFASGCSS---LRSADS-----------------PQSARTRIDPRYRRQEV 48 Query: 62 DYTTNEPVGTIVIDTAAHQLYLVEGDGKAMRYGIGVGKDGLAFAGTATIRRKAEWPHWTP 121 Y E GTIV++T LY V+G G A+RYGIGVG++G G A I RKAEWP WTP Sbjct: 49 AYYGGESPGTIVVNTEERYLYYVQGGGSAVRYGIGVGEEGRTLKGRAKIGRKAEWPSWTP 108 Query: 122 TKNMMNREPARYGHLASGMAGGLGNPLGPRALYLFQGERDTMFRIHGTTEPETIGRAVSS 181 T NM+ R+P A G++GGL NPLG ALYL+QG DTMFR+HGT EP TIG+AVSS Sbjct: 109 TANMIRRKP-HLAQYAGGVSGGLHNPLGAAALYLYQGGNDTMFRLHGTNEPWTIGQAVSS 167 Query: 182 GCIRLINQDIIDLYSRVKIGSRVVVI 207 GCIRL N DI+DLYSR +G+ V++I Sbjct: 168 GCIRLTNDDIVDLYSRTPVGATVLII 193 >mlr5313 Non COG Length = 205 Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 128/200 (64%), Gaps = 7/200 (3%) Query: 8 AMAIVLSGCASRSGLVEADIISTPSEYAQLVDGVYTLPAVDISGVDPAMLRQRVDYTTNE 67 A++ ++GC++ G + ++ +Y + D Y LP V I V RQ V+Y T E Sbjct: 13 ALSTAIAGCSTIGGQIFSN------DYGAVTDAGYQLPRVPIEKVPRQFHRQEVNYDTKE 66 Query: 68 PVGTIVIDTAAHQLYLVEGDGKAMRYGIGVGKDGLAFAGTATIRRKAEWPHWTPTKNMMN 127 GTI++DT LY VE DG+A+RYGIGVG++G + GTA I K EWP WTP + M+ Sbjct: 67 KPGTIIVDTQNKFLYFVEDDGRAIRYGIGVGREGFEWHGTAHIALKREWPTWTPPREMIK 126 Query: 128 REPARYGHLASGMAGGLGNPLGPRALYLFQGERDTMFRIHGTTEPETIGRAVSSGCIRLI 187 R+P A GM GL NPLG RA+YLF D +R+HG+ E +IG+A+SSGCIRL+ Sbjct: 127 RQP-ELAKFADGMEPGLKNPLGARAMYLFNKGGDMGYRLHGSPEWNSIGKAMSSGCIRLM 185 Query: 188 NQDIIDLYSRVKIGSRVVVI 207 NQDIIDLY R +G++V+V+ Sbjct: 186 NQDIIDLYDRTSVGAKVIVM 205 >BMEI0848 [S] COG1376 Uncharacterized protein conserved in bacteria Bme Brucella melitensis Length = 215 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/156 (57%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 52 VDPAMLRQRVDYTTNEPVGTIVIDTAAHQLYLVEGDGKAMRYGIGVGKDGLAFAGTATIR 111 +DP Q V +T +P GTIVID LYLVE A RYGI VGK GL F G ATI Sbjct: 61 IDPKFRPQDVTFTGYKP-GTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATIS 119 Query: 112 RKAEWPHWTPTKNMMNREPARYGHLASGMAGGLGNPLGPRALYLFQGERDTMFRIHGTTE 171 K EWP W PTK M+ R+PA YG +GM GG GNPLG RA+YLFQG +DT RIHGT + Sbjct: 120 AKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQ 179 Query: 172 PETIGRAVSSGCIRLINQDIIDLYSRVKIGSRVVVI 207 P TIG + S+GC R+IN+D++DLY RV +G+ VVV+ Sbjct: 180 PWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL 215