BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0003.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1623 [L] COG2963 Transposase and inactivated derivatives Sme ...    66   2e-11
SMa2191 [L] COG2963 Transposase and inactivated derivatives Sme ...    66   2e-11
BMEII0711 [L] COG2963 Transposase and inactivated derivatives Bm...    66   2e-11
SMc03278 [L] COG2963 Transposase and inactivated derivatives Sme...    62   4e-10
RSp0566 [L] COG2963 Transposase and inactivated derivatives Rso ...    57   9e-09

>SMa1623 [L] COG2963 Transposase and inactivated derivatives Sme
           Sinorhizobium meliloti
          Length = 124

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 17/134 (12%)

Query: 1   MRVEVLGGLERRRRWSQDDKARIVEETLVPGAKVTEVARRNGVAASLVFTWRRQARTSEQ 60
           MRVE+LG  ERRRRW    K  IV    + GA VTEVA R+ V+   ++ WR + +  + 
Sbjct: 1   MRVEILGQ-ERRRRWGDAKKLDIVMSIGLDGATVTEVAHRHDVSRQQIYAWRHELK-KKG 58

Query: 61  VVPS-----FAPVQIVATEVEEAPKLLPAGDGRVRSVASARTGLIEIDLGNRRRIRVDAH 115
           ++PS     F PV + A            G   VR   +  + +IE+ L + R +R D+ 
Sbjct: 59  LLPSTADTVFLPVDMAAMH----------GAPLVREDVARVSAMIELRLNDGRSLRFDSG 108

Query: 116 VDPEALARVLEVLE 129
           VDP  L R++  +E
Sbjct: 109 VDPAVLTRLIRAVE 122


>SMa2191 [L] COG2963 Transposase and inactivated derivatives Sme
           Sinorhizobium meliloti
          Length = 128

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 17/134 (12%)

Query: 1   MRVEVLGGLERRRRWSQDDKARIVEETLVPGAKVTEVARRNGVAASLVFTWRRQARTSEQ 60
           MRVE+LG  ERRRRW    K  IV    + GA VTEVA R+ V+   ++ WR + +  + 
Sbjct: 5   MRVEILGQ-ERRRRWGDAKKLDIVMSIGLDGATVTEVAHRHDVSRQQIYAWRHELK-KKG 62

Query: 61  VVPS-----FAPVQIVATEVEEAPKLLPAGDGRVRSVASARTGLIEIDLGNRRRIRVDAH 115
           ++PS     F PV + A            G   VR   +  + +IE+ L + R +R D+ 
Sbjct: 63  LLPSTADTVFLPVDMAAMH----------GAPLVREDVARVSAMIELRLNDGRSLRFDSG 112

Query: 116 VDPEALARVLEVLE 129
           VDP  L R++  +E
Sbjct: 113 VDPAVLTRLIRAVE 126


>BMEII0711 [L] COG2963 Transposase and inactivated derivatives Bme Brucella
           melitensis
          Length = 153

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 2   RVEVLGGLERRRRWSQDDKARIVEETLVPGAKVTEVARRNGVAASLVFTWRRQAR--TSE 59
           RVEVL G ERRRRWS D+KA I   + VPGA ++ VAR+ GV+  L+  WRR AR   S+
Sbjct: 36  RVEVLLGKERRRRWSADEKAEITAASFVPGANISAVARQYGVSQGLLHYWRRCAREHMSD 95

Query: 60  QVVPSFAPV 68
                F PV
Sbjct: 96  DEEMRFVPV 104


>SMc03278 [L] COG2963 Transposase and inactivated derivatives Sme
           Sinorhizobium meliloti
          Length = 152

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 16/137 (11%)

Query: 2   RVEVLGGLERRRRWSQDDKARIVEETLVPGAKVTEVARRNGVAASLVFTWRRQ----ART 57
           R+EV+ G  +RR WS ++KARI+ E+  P   ++ VARR GV   L+  WRRQ    AR 
Sbjct: 24  RIEVITGRRQRRNWSDEEKARILAESAEPDVNISAVARRWGVNRGLLNVWRRQAGLTARR 83

Query: 58  SEQVVPS---FAPVQIVATEVEEAPKLLPAGDGRVRSVASARTGLIEIDLGNRRRIRVDA 114
           S Q       F PV +V    E AP    + D     +AS  +G IEI++    R+ V  
Sbjct: 84  SVQACAQQAMFVPVTVVG---ERAPPQSASSD-----IASVASGRIEIEIAG-ARMTVIG 134

Query: 115 HVDPEALARVLEVLERR 131
            V PE    ++  L  R
Sbjct: 135 SVAPELAQAIVAALRAR 151


>RSp0566 [L] COG2963 Transposase and inactivated derivatives Rso Ralstonia
          solanacearum
          Length = 122

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%)

Query: 3  VEVLGGLERRRRWSQDDKARIVEETLVPGAKVTEVARRNGVAASLVFTWRRQARTSEQVV 62
          +EVL G ERRRRWS ++K  +V E+  PG  V+ VAR++GV  + VF WR+  +      
Sbjct: 2  MEVLTGPERRRRWSVEEKLALVRESFEPGKTVSMVARQHGVNPNQVFHWRKLYQDGSLSA 61

Query: 63 PSFAPVQIVATEVEEAPKLL 82
           S     + A+E+ EA KL+
Sbjct: 62 VSAGEEVVPASELAEALKLV 81