BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0177.0005.p (330 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC3094_4 [T] COG2200 FOG Ccr Caulobacter vibrioides 294 1e-79 RSc1545 [T] COG5001 Predicted signal transduction protein contai... 284 2e-76 AGl2664_2 [T] COG2200 FOG Atu Agrobacterium tumefaciens strain C... 282 9e-76 SMa1548_3 [T] COG2200 FOG Sme Sinorhizobium meliloti 276 7e-74 CC0740_2 [T] COG2200 FOG Ccr Caulobacter vibrioides 262 8e-70 >CC3094_4 [T] COG2200 FOG Ccr Caulobacter vibrioides Length = 283 Score = 294 bits (753), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 139/229 (60%), Positives = 172/229 (75%) Query: 81 EFSLYYQPLYDLHLDRICGFEALLRWHHPKRGMVSPDQFIPIAEEIGLIGPLGEWVLNRA 140 EF L+YQPLY L +R+ G EALLRW HP+RGMVSP FIP+AEEIGLI LGEWVL RA Sbjct: 1 EFELFYQPLYHLGDERVTGCEALLRWRHPERGMVSPADFIPLAEEIGLIVQLGEWVLRRA 60 Query: 141 CEQATTWPGEMKLAVNVSAVQFRDADFIDVVVNALAASKLSPRRLELEITESVFLANSNE 200 C +A WP ++LAVN+S QFRD + VV+ALAAS L +RLELEITESV L +S Sbjct: 61 CAEAANWPEHVRLAVNLSPAQFRDRGLVRTVVSALAASGLPAQRLELEITESVLLQDSQA 120 Query: 201 TLATLHKLKAQGLRIALDDFGTGYSSLSYLRSFPFDKLKIDKSFVRDATATHGSKSIVRA 260 + LH LKA G+RI++DDFGTGYSSLSYLRSFPFDK+KID++FVRD + +I++A Sbjct: 121 NMTMLHDLKALGVRISMDDFGTGYSSLSYLRSFPFDKIKIDQTFVRDILHDSDAMAIIKA 180 Query: 261 VISLGRSLGMTTIAEGIETVEQLDHMRAEGCNEAQGFLLSHPVPVTEIA 309 V+ LG S+G+ T AEG+ET QLD +R +GC E QG+ +S P P +EIA Sbjct: 181 VLDLGASMGVVTTAEGVETQAQLDALRQQGCAEIQGYFISRPAPASEIA 229 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 284 bits (727), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/332 (46%), Positives = 206/332 (62%), Gaps = 6/332 (1%) Query: 1 VGAPYELNG-HRVVVGCSVGISMSPGDGTTGEKLLKNADVALYRAKMEGRGTWRFFEPAM 59 +GAPY L V +G S+GI+++P G E LL AD+ALY AK G+G R F M Sbjct: 446 LGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADM 505 Query: 60 DASLQRRRALELDLREAMA-KDEFSLYYQPLYDLHLDRICGFEALLRWHHPKRGMVSPDQ 118 + +Q R LE LR A+ +D ++YQP+ D+ ++ EAL+RWHH +RG V PD+ Sbjct: 506 ETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVPPDE 565 Query: 119 FIPIAEEIGLIGPLGEWVLNRACEQATTWPGEMKLAVNVSAVQFRDADFIDVVVNALAAS 178 F+PIAE+ GLI LG +VL+RAC +AT W ++AVNVS +Q A V AL S Sbjct: 566 FVPIAEQSGLIDQLGRFVLHRACREATRWEDGARVAVNVSPMQLGKATLAQTVHAALIDS 625 Query: 179 KLSPRRLELEITESVFLANSNETLATLHKLKAQGLRIALDDFGTGYSSLSYLRSFPFDKL 238 L+P RLE+E+TE+ + N E+ L +L G+R+ALDDFGTGYSSL++LR+FPFDK+ Sbjct: 626 GLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKI 685 Query: 239 KIDKSFVRDATATHGSKSIVRAVISLGRSLGMTTIAEGIETVEQLDHMRAEGCNEAQGFL 298 KID+SFVRD S +VRA+ LGR LG+TT+AEG+ET + +R GC EAQG+ Sbjct: 686 KIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYY 745 Query: 299 LSHPVPVTEIAAKILELRNGFKPASVKTALAS 330 P P E ++ PA ALAS Sbjct: 746 YGRPAPSDEDRPRV----EACGPARTDAALAS 773 >AGl2664_2 [T] COG2200 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 262 Score = 282 bits (721), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 134/256 (52%), Positives = 177/256 (69%) Query: 55 FEPAMDASLQRRRALELDLREAMAKDEFSLYYQPLYDLHLDRICGFEALLRWHHPKRGMV 114 F+ M L +++ E DL+ A+ DE +YYQP ++CGFEALLRW HP RG V Sbjct: 3 FKVRMQKQLTEKKSFEADLQTALQNDEMEVYYQPQVATQTRKLCGFEALLRWKHPVRGDV 62 Query: 115 SPDQFIPIAEEIGLIGPLGEWVLNRACEQATTWPGEMKLAVNVSAVQFRDADFIDVVVNA 174 P FIP+AE GLI LG+WV+ AC +A W +MK+AVN+S VQF + I V+ A Sbjct: 63 PPSVFIPVAERTGLIHSLGKWVMETACREAMGWDEDMKVAVNLSPVQFHSTNLIQNVMGA 122 Query: 175 LAASKLSPRRLELEITESVFLANSNETLATLHKLKAQGLRIALDDFGTGYSSLSYLRSFP 234 L S L P RLELEITES+ L S++T+ TL +LKA G++IA+DDFGTGYSSL+ LR P Sbjct: 123 LEKSGLEPSRLELEITESILLNKSDQTINTLSRLKAVGIKIAMDDFGTGYSSLANLRGVP 182 Query: 235 FDKLKIDKSFVRDATATHGSKSIVRAVISLGRSLGMTTIAEGIETVEQLDHMRAEGCNEA 294 FDK+KID+SF+RD T+ + +IV V+ +GRSL MTTIAEGIET EQ + +R GC++ Sbjct: 183 FDKIKIDRSFLRDITSDRDALAIVEFVVGVGRSLRMTTIAEGIETEEQYECVRRLGCDQV 242 Query: 295 QGFLLSHPVPVTEIAA 310 QG+L+S P+P E+ A Sbjct: 243 QGYLISRPLPAKELVA 258 >SMa1548_3 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 253 Score = 276 bits (705), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 131/246 (53%), Positives = 175/246 (71%) Query: 67 RALELDLREAMAKDEFSLYYQPLYDLHLDRICGFEALLRWHHPKRGMVSPDQFIPIAEEI 126 + +++ +R+A+AK EF L+YQPL L + EALLRW HP+RGM++P +FIPIAEE Sbjct: 3 QQMKITMRDALAKGEFELHYQPLVSLESRCVSCCEALLRWRHPERGMIAPSEFIPIAEET 62 Query: 127 GLIGPLGEWVLNRACEQATTWPGEMKLAVNVSAVQFRDADFIDVVVNALAASKLSPRRLE 186 GLI P+GEW+L AC QA WP + +AVN+S VQF+ + + V AL+A++L P RL+ Sbjct: 63 GLIVPIGEWILGEACRQAARWPERVSVAVNLSPVQFKHRNLVRAVAKALSATRLDPARLQ 122 Query: 187 LEITESVFLANSNETLATLHKLKAQGLRIALDDFGTGYSSLSYLRSFPFDKLKIDKSFVR 246 LEITE+V L S L L L+ G++IA+DDFGTGYSSL YLRSFPFDK+K+D++FVR Sbjct: 123 LEITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVR 182 Query: 247 DATATHGSKSIVRAVISLGRSLGMTTIAEGIETVEQLDHMRAEGCNEAQGFLLSHPVPVT 306 D S +IV+AV LG+SLGMTT EG+ET +QL + +EG NE QG+L S P+P Sbjct: 183 DLPHGKESLAIVKAVAGLGQSLGMTTSVEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAA 242 Query: 307 EIAAKI 312 EI+ I Sbjct: 243 EISKLI 248 >CC0740_2 [T] COG2200 FOG Ccr Caulobacter vibrioides Length = 276 Score = 262 bits (669), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 129/250 (51%), Positives = 167/250 (66%) Query: 64 QRRRALELDLREAMAKDEFSLYYQPLYDLHLDRICGFEALLRWHHPKRGMVSPDQFIPIA 123 Q RRALE+DLREA+A+DE L++QPL + GFEALLRW HP RG+V P FI A Sbjct: 1 QERRALEMDLREALARDELKLFFQPLIGRRDNETTGFEALLRWQHPTRGLVPPSDFIECA 60 Query: 124 EEIGLIGPLGEWVLNRACEQATTWPGEMKLAVNVSAVQFRDADFIDVVVNALAASKLSPR 183 E+ GLIG +GEWVLN AC A TWP + +AVN+S QF D +D V AL AS L+P Sbjct: 61 EQWGLIGRIGEWVLNEACRTAATWPSHLTVAVNLSPNQFASGDLVDQVRAALKASGLAPA 120 Query: 184 RLELEITESVFLANSNETLATLHKLKAQGLRIALDDFGTGYSSLSYLRSFPFDKLKIDKS 243 RLELEITE + L +S +TL L LKA G++IA+DDFGTGYSSL+YL FPFDK+KID+S Sbjct: 121 RLELEITEGLLLHDSAKTLEQLAALKALGVKIAMDDFGTGYSSLAYLWRFPFDKIKIDRS 180 Query: 244 FVRDATATHGSKSIVRAVISLGRSLGMTTIAEGIETVEQLDHMRAEGCNEAQGFLLSHPV 303 FV + I+R + LG++L + AEG+ET Q + C++ QGFL P+ Sbjct: 181 FVAEMQDNVAIADILRTIALLGQTLNLEVTAEGVETQAQARLLAEMRCDQFQGFLFGRPM 240 Query: 304 PVTEIAAKIL 313 PV +I + ++ Sbjct: 241 PVGDIPSFLM 250