BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0002.p         (67 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0518 [K] COG1278 Cold shock proteins Bme Brucella melitensis       94   8e-20
SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti    94   9e-20
AGl3376 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefa...    91   6e-19
AGc161 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefac...    90   1e-18
CC2623 [K] COG1278 Cold shock proteins Ccr Caulobacter vibrioides      90   2e-18

>BMEI0518 [K] COG1278 Cold shock proteins Bme Brucella melitensis
          Length = 101

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 54/66 (81%), Gaps = 2/66 (3%)

Query: 1  MPKGTVKWFNPTKGYGFIKPAVGDKDVFVHISAVERAGLSTLNENQSVEYELVENR--GK 58
          M  GTVKWFN TKG+GFI+P  G  DVFVHISAV+RAGL+TL+E Q V YE+V++R  G+
Sbjct: 33 MATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 92

Query: 59 ASAENL 64
          +SA+NL
Sbjct: 93 SSADNL 98


>SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti
          Length = 69

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 2/68 (2%)

Query: 1  MPKGTVKWFNPTKGYGFIKPAVGDKDVFVHISAVERAGLSTLNENQSVEYELVENR--GK 58
          M  GTVKWFN TKG+GFI+P  G  DVFVHISAVERAGLSTL + Q V +EL ++R  GK
Sbjct: 1  MASGTVKWFNSTKGFGFIQPDDGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRRSGK 60

Query: 59 ASAENLKV 66
           SA+NL+ 
Sbjct: 61 TSADNLRA 68


>AGl3376 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 98

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 54/68 (79%), Gaps = 2/68 (2%)

Query: 1  MPKGTVKWFNPTKGYGFIKPAVGDKDVFVHISAVERAGLSTLNENQSVEYELVENR--GK 58
          M  GTVKWFN TKG+GFI+P  G  DVFVHISAVERAG+ +LN+ Q + YE+V++R  GK
Sbjct: 30 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRRSGK 89

Query: 59 ASAENLKV 66
          +SA+NL+ 
Sbjct: 90 SSADNLQA 97


>AGc161 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 163

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1   MPKGTVKWFNPTKGYGFIKPAVGDKDVFVHISAVERAGLSTLNENQSVEYELVENR--GK 58
           M  GTVKWFN TKGYGFI+P  G +DVFVHISAVERAGL+ LN+ Q + YEL+++R  GK
Sbjct: 95  MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGLTALNDGQKLSYELMQDRRSGK 154

Query: 59  ASAENL 64
            SA  L
Sbjct: 155 MSAGEL 160


>CC2623 [K] COG1278 Cold shock proteins Ccr Caulobacter vibrioides
          Length = 69

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 1  MPKGTVKWFNPTKGYGFIKPAVGDKDVFVHISAVERAGLSTLNENQSVEYELVENR--GK 58
          M  G VKWFNP KG+GFI+P  G +DVFVHI+AVER+GLS LNE   V YEL E+R  GK
Sbjct: 1  MANGVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60

Query: 59 ASAENLKV 66
           SA NL++
Sbjct: 61 TSAGNLRI 68