BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0005.p         (321 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eutR [K] COG2207 AraC-type DNA-binding domain-containing protein...    61   3e-09
ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing protei...    60   6e-09
ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing prot...    60   6e-09

>eutR [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco
           Escherichia coli K12
          Length = 350

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 203 ERYKRIIDHIDDAIMSTPASNNTCDELANELGISVRTLHTAAQSICGAGIHQYRRLRQLW 262
           + Y+R++    + ++   +   T  +L N+L +S RTL  A  +I G G + + +  +L 
Sbjct: 236 QSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLN 295

Query: 263 LVRQHLRMGYP-GLTVKATALAHGFWHMGEFSRMYRAAFGEVPSRTL 308
            VR+ L   +   +TVK  A+  GFWH+G+F+  Y+  F E PS TL
Sbjct: 296 AVRRELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTL 342


>ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ
           Escherichia coli O157:H7 EDL933
          Length = 350

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 203 ERYKRIIDHIDDAIMSTPASNNTCDELANELGISVRTLHTAAQSICGAGIHQYRRLRQLW 262
           + Y+R++    + ++   +   T  +L N+L +S RTL  A  +I G G + + +  +L 
Sbjct: 236 QSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLN 295

Query: 263 LVRQHLRMGYP-GLTVKATALAHGFWHMGEFSRMYRAAFGEVPSRTL 308
            VR+ L   +    TVK  A+  GFWH+G+F+  Y+  F E PS TL
Sbjct: 296 AVRRELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTL 342


>ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs
           Escherichia coli O157:H7
          Length = 350

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 203 ERYKRIIDHIDDAIMSTPASNNTCDELANELGISVRTLHTAAQSICGAGIHQYRRLRQLW 262
           + Y+R++    + ++   +   T  +L N+L +S RTL  A  +I G G + + +  +L 
Sbjct: 236 QSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLN 295

Query: 263 LVRQHLRMGYP-GLTVKATALAHGFWHMGEFSRMYRAAFGEVPSRTL 308
            VR+ L   +    TVK  A+  GFWH+G+F+  Y+  F E PS TL
Sbjct: 296 AVRRELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTL 342