BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0002.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3576 [K] COG0250 Transcription antiterminator Atu Agrobacteri...   289   3e-78
SMc01322 [K] COG0250 Transcription antiterminator Sme Sinorhizob...   288   3e-78
BMEI0744 [K] COG0250 Transcription antiterminator Bme Brucella m...   276   1e-74
CC3205 [K] COG0250 Transcription antiterminator Ccr Caulobacter ...   271   4e-73
mlr0270 [K] COG0250 Transcription antiterminator Mlo Mesorhizobi...   270   1e-72

>AGc3576 [K] COG0250 Transcription antiterminator Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 176

 Score =  289 bits (739), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 160/176 (90%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKVAESI E+A+Q+GL  LFE++LVPTEKV EVRRGRK+D+ERKF
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVLV+  LTDEA+HLIKNTPKVTGFLG+++KP+PI + EA RIL QVQEGVERPK+S
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDSKPVPIPDYEADRILGQVQEGVERPKSS 120

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           VSFEIGE VRV+DGPFASF+GVV+++DE RSR+KV VSIFGRATPVELE+ QVEKV
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYNQVEKV 176


>SMc01322 [K] COG0250 Transcription antiterminator Sme Sinorhizobium meliloti
          Length = 176

 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/176 (78%), Positives = 158/176 (89%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKVAESI E+AKQ+GL  LFE++LVPTEKV EVRRGRK+DAERKF
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKAKQKGLTHLFEKILVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVLV+  LTDEA+HLIKNTPKVTGFLG ++KP+PI + EA RIL QVQ+GVERPK S
Sbjct: 61  FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           VSFEIGE VRV+DGPFASF+G V+++DE RSR+KV VSIFGRATPVELE+GQVEKV
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176


>BMEI0744 [K] COG0250 Transcription antiterminator Bme Brucella melitensis
          Length = 175

 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 157/176 (89%), Gaps = 1/176 (0%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKVAE I  +AKQ+GL +L EQ++VPTEK+ EVRRGRK+DAERKF
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVLV+ KLTD  F LIKNTPKVTGFLG ++KP+P+S+ E  +IL+QVQ+GVERPK S
Sbjct: 61  FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           VSFEIGENVRV+DGPFASF+G+V+E+DE R+R+KV VSIFGRATPV+LE+GQV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175


>CC3205 [K] COG0250 Transcription antiterminator Ccr Caulobacter vibrioides
          Length = 185

 Score =  271 bits (694), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 152/175 (86%)

Query: 2   DKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKFF 61
           + +WYIVHAYSNFEKKVAESIREQAK +GLEE F ++LVPTE V E+RRGRK++AERKFF
Sbjct: 10  NHKWYIVHAYSNFEKKVAESIREQAKNQGLEENFSEILVPTEDVVEIRRGRKVNAERKFF 69

Query: 62  PGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASV 121
           PGYVLVKM L+DEA+HLIKNTPKVTGFLG+ +KPMP+SE E  RI+  ++EGV  PKA V
Sbjct: 70  PGYVLVKMNLSDEAYHLIKNTPKVTGFLGSGSKPMPVSEKEVQRIIGTIEEGVAAPKAVV 129

Query: 122 SFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
            +E+GENVRV DGPFASF+G VE +DE ++R++V VSIFGRATPVELE+ QVEK+
Sbjct: 130 LYEVGENVRVTDGPFASFNGSVEYVDEEKARLRVTVSIFGRATPVELEYNQVEKI 184


>mlr0270 [K] COG0250 Transcription antiterminator Mlo Mesorhizobium loti
          Length = 175

 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 152/175 (86%), Gaps = 1/175 (0%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKVAE I  +AKQ+GL    EQ++VPTEKV EVRRGRK+DAERKF
Sbjct: 1   MAARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVL+K  LTD  F L+KNTPKVTGFLG ++KP+PI+EAEA RIL+QVQEGVERPK S
Sbjct: 61  FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEK 175
           V+FEIGE +RV+DGPFASF+G V+E+DE R+R+KV VSIFGRA PV+LEFGQVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174