BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0166.0016.p (1058 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll0870 [L] COG0587 DNA polymerase III, alpha subunit Mlo Mesorh... 1091 0.0 BMEI1137 [L] COG0587 DNA polymerase III, alpha subunit Bme Bruce... 1083 0.0 AGc2379 [L] COG0587 DNA polymerase III, alpha subunit Atu Agroba... 1075 0.0 SMc01375 [L] COG0587 DNA polymerase III, alpha subunit Sme Sinor... 1063 0.0 CC1926 [L] COG0587 DNA polymerase III, alpha subunit Ccr Cauloba... 919 0.0 >mll0870 [L] COG0587 DNA polymerase III, alpha subunit Mlo Mesorhizobium loti Length = 1175 Score = 1091 bits (2821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/829 (64%), Positives = 653/829 (78%), Gaps = 17/829 (2%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF--------------LANRLRVHGLSPGMTEED 59 RCS+ PKTR PILP FT G A+ L RL +HG +PG T E Sbjct: 298 RCSYYPKTRSPILPRFTGGDASDKDAAEKAEAAELARQAREGLDARLALHGPTPGYTVEQ 357 Query: 60 YSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDLD 119 Y +RL FEL +I +MK+ GYFLIV+DFIKWAKAQGIPVGPGRGSGAGSLVA+ TITD+D Sbjct: 358 YRERLEFELGIIEKMKFPGYFLIVADFIKWAKAQGIPVGPGRGSGAGSLVAYSTTITDID 417 Query: 120 PMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQARG 179 P+RF+LLFERFLNP+RVSMPDFDIDFCQDRR EVI+YVQ++YGRDQV QIITFGTLQAR Sbjct: 418 PLRFSLLFERFLNPDRVSMPDFDIDFCQDRREEVIRYVQQKYGRDQVGQIITFGTLQARA 477 Query: 180 VLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDIA 239 VLRDVGRVLQMPYGQVDKL+K+VPQNPA PV LA AI EP+ +++P+V D+A Sbjct: 478 VLRDVGRVLQMPYGQVDKLSKMVPQNPANPVKLADAIANEPRFAEEAEKEPIVQTLLDMA 537 Query: 240 QRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLG 299 Q+LEGL RHASTHAAGIVIGDRPLSELVP+YRDP+SDMPVTQFNMK+VE AGLVKFDFLG Sbjct: 538 QKLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLG 597 Query: 300 LKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALIDM 359 LKTLTVL+ AVKL+++R +D+DLAT+P+DD +Y ML+RG+VVGVFQVES GMR+ALI M Sbjct: 598 LKTLTVLETAVKLIRRRGIDIDLATIPLDDPETYAMLSRGEVVGVFQVESAGMRKALIGM 657 Query: 360 RPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQV 419 RPD EDIIALVALYRPGPM NIPTY ARKHG+EE +HP ++ ++KET GVI+YQEQV Sbjct: 658 RPDCIEDIIALVALYRPGPMENIPTYNARKHGEEEMASIHPKIDHLVKETQGVIVYQEQV 717 Query: 420 MQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLAK 479 MQIAQ+++GYSLG+ADLLRRAMGKKIRAEMDKQR+ FV+GA++ GV+K QA+ IF+LLAK Sbjct: 718 MQIAQELSGYSLGEADLLRRAMGKKIRAEMDKQRERFVSGAVERGVSKPQADFIFDLLAK 777 Query: 480 FADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGIK 539 FADYGFNKSHAAAYA+VSY TAY+KAHYPVEFLAASMTL++ NTDKL++FR +A RLGI+ Sbjct: 778 FADYGFNKSHAAAYAVVSYQTAYLKAHYPVEFLAASMTLDMGNTDKLADFRQDALRLGIE 837 Query: 540 VEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVSP 599 V AP++ S FEV +N IYY++AALKGVG AVE I+ R K F +LADF RV P Sbjct: 838 VLAPSVMTSFRPFEVGENRIYYSMAALKGVGDAAVEHIVAVRGEKP-FKNLADFCERVDP 896 Query: 600 RAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGA--AD 657 + V KR+ ESL AGA D +RA++ AG + ++ + + A SGQ D+FG + A Sbjct: 897 KIVGKRVFESLIMAGALDCFGHDRAQMMAGVERMMGLASLAQQNAVSGQADIFGASLGAQ 956 Query: 658 APSIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGA 717 + ++ LP +PWL ADRL RE+ +GF+LS HPLD+Y AL+++RVQ+WAEFS AVK GA Sbjct: 957 SQALNLPATDPWLAADRLHREFQVVGFYLSAHPLDEYKAALQKMRVQNWAEFSAAVKRGA 1016 Query: 718 TAGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQ 777 +AG++A TV S+ ER+T+TGNKMG++ SD +G +EAVLFSE LAQYRD+LE G +V++ Sbjct: 1017 SAGRLAGTVTSKQERKTRTGNKMGVVAFSDTSGQYEAVLFSEALAQYRDLLEAGRSVVIT 1076 Query: 778 LGAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLN 826 + AE + E V R+ + L+ A++ QK LRIFVR+ P I +L Sbjct: 1077 VAAEDRPEGVNLRINSVQSLEEEASRIQKALRIFVRNEGPASIIQSQLT 1125 >BMEI1137 [L] COG0587 DNA polymerase III, alpha subunit Bme Brucella melitensis Length = 1178 Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/827 (64%), Positives = 651/827 (78%), Gaps = 15/827 (1%) Query: 14 RCSFRPKTRKPILPFFT-----VGAAASAXFFFLA--------NRLRVHGLSPGMTEEDY 60 RCS+ +TRKPILP FT AA A LA RL GL+ G T E Y Sbjct: 303 RCSWYTQTRKPILPRFTGESDDPEAAVQAEADELARQAREGLKKRLETAGLAEGYTPEQY 362 Query: 61 SKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDLDP 120 ++RL +E+ +ITRMK+ GYFLIV+DFIKWAKA GIPVGPGRGSGAGSLVA+ LTITD+DP Sbjct: 363 AERLEYEIGIITRMKFPGYFLIVADFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDP 422 Query: 121 MRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQARGV 180 +RF+LLFERFLNP+RVSMPDFDIDFCQDRR EVI+YVQE+YGRDQVAQIITFGTLQAR V Sbjct: 423 LRFSLLFERFLNPDRVSMPDFDIDFCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAV 482 Query: 181 LRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDIAQ 240 LRDVGRVL+MPYGQVD+L KLVPQNPA PV+LAQAIE EPK+ R+++PVV R D+A Sbjct: 483 LRDVGRVLEMPYGQVDRLCKLVPQNPANPVSLAQAIESEPKINEEREKEPVVGRLLDMAL 542 Query: 241 RLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGL 300 +LEGL RHASTHAAGIVIGDRPLSELVP+YRDP+SDMPVTQFNMKWVE AGLVKFDFLGL Sbjct: 543 KLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGL 602 Query: 301 KTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALIDMR 360 KTLTVL AVKL+ ++ +D+DL+ LP+DDA +Y+ML+RG+ VGVFQVES GMR+AL+ M+ Sbjct: 603 KTLTVLQTAVKLVARKGIDIDLSHLPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMK 662 Query: 361 PDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQVM 420 PDR EDIIALVALYRPGPM NIPTY ARK+G+EE +HP ++ ++KET GVI+YQEQVM Sbjct: 663 PDRVEDIIALVALYRPGPMENIPTYNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVM 722 Query: 421 QIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLAKF 480 QIAQ ++GYSLG+ADLLRRAMGKKIR EMDKQR FV GA++ GV K QA IF+LLAKF Sbjct: 723 QIAQVLSGYSLGEADLLRRAMGKKIREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKF 782 Query: 481 ADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGIKV 540 ADYGFNKSHAAAYA+VSY TAYMKAHYPVEFLAASMT +++NTDKL++FR EA RLGI+V Sbjct: 783 ADYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEV 842 Query: 541 EAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVSPR 600 P++ S FEV + I+Y+LAA+KGVG AV+ I++ R K F SL DF R+ P+ Sbjct: 843 VPPSVKTSFRPFEVGEKKIFYSLAAIKGVGEAAVDHIVDVRAEKQ-FESLEDFCERIDPK 901 Query: 601 AVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFG-GAADAP 659 +N+R++ESL AGA D +RA + AG D IL QR+ E A SGQ+D+FG A Sbjct: 902 IINRRVLESLINAGAMDCFGRDRAAMCAGMDRILGFAQRTQENAVSGQSDIFGLSGAPRE 961 Query: 660 SIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATA 719 +++LP PWLP++ L RE+ A+GF+LS HPLD+Y L R+RVQSWA+FS AVK GA+A Sbjct: 962 TLILPPTAPWLPSEMLHREFQAVGFYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASA 1021 Query: 720 GKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQLG 779 G++A TV +R ER+T+TGNKMGI+ LSD +G FEAVLFSEGLAQYRD+LE G +V++ + Sbjct: 1022 GRLAGTVTARQERKTRTGNKMGIVQLSDASGQFEAVLFSEGLAQYRDLLESGKSVVITVQ 1081 Query: 780 AELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLN 826 AE + E + R+ + L+ A + QK +R+++R + IA N Sbjct: 1082 AENRPEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHFN 1128 >AGc2379 [L] COG0587 DNA polymerase III, alpha subunit Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 1167 Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/830 (63%), Positives = 649/830 (78%), Gaps = 19/830 (2%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF--------------LANRLRVHGLSPGMTEED 59 RCS+ K R PILP FT GA+ L RL G++PG TE+D Sbjct: 290 RCSYVLKKRGPILPRFT-GASDDPEAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQD 348 Query: 60 YSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDLD 119 Y +RL FEL VI+RMK+ GYFLIV+DFIKWAK Q IPVGPGRGSGAGSLVA+ LTITD+D Sbjct: 349 YRERLDFELGVISRMKFPGYFLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVD 408 Query: 120 PMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQARG 179 P+RF+LLFERFLNPERVSMPDFDIDFCQDRR EVI+YVQ +YGR+QVAQIITFG+LQAR Sbjct: 409 PLRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARA 468 Query: 180 VLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDIA 239 LRDVGRVL+MPYGQVDK+ KLVP NPA P L++AIE EP+LQ D++PVVAR DIA Sbjct: 469 ALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIA 528 Query: 240 QRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLG 299 Q++EGL RHASTHAAGIVIGDRPLS+LVP+YRDP+SDMPVTQFNMKWVE AGLVKFDFLG Sbjct: 529 QKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLG 588 Query: 300 LKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALIDM 359 LKTLTVL VAV + +R + VDLA +P++DA +Y+ML+RG+ +GVFQVES GMR+ALI M Sbjct: 589 LKTLTVLKVAVDFVAKRGIKVDLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGM 648 Query: 360 RPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQV 419 RPD EDIIALVALYRPGPM NIP Y ARKHG+EE E +HP ++ +LKET GVI+YQEQV Sbjct: 649 RPDCIEDIIALVALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQV 708 Query: 420 MQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLAK 479 MQIAQ ++GYSLG+ADLLRRAMGKKI+ EMD+QR+ FV GA+KNGV+K QA TIF+LLAK Sbjct: 709 MQIAQVLSGYSLGEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAK 768 Query: 480 FADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGIK 539 FA+YGFNKSHAAAYA+VSY TAYMKAHYPVEFLAASMTL++ NT+KL++FR +A RLGI+ Sbjct: 769 FANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIE 828 Query: 540 VEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVSP 599 V AP++ S FE +N IYY+LAA+KGVG AVE I++ R K FTSL DF R+ P Sbjct: 829 VVAPSVQTSFRQFETGENRIYYSLAAIKGVGEGAVEHIVQVRGEKP-FTSLEDFCLRIDP 887 Query: 600 RAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMF--GGAAD 657 + +N+R++ESL AGAFD +RA + G D I+ Q + T GQ+DMF GG Sbjct: 888 KQINRRVLESLINAGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTG 947 Query: 658 APSIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGA 717 ++LP + WLP+++L REY +GF+L+ HPLD Y L++LRVQ++A+FS AVK GA Sbjct: 948 PEKLILPAFQSWLPSEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGA 1007 Query: 718 -TAGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLL 776 T G++A TV + ER+T+TGNKMGI+ SD +G +EAVLFSEGLAQ+RD+LE G ++++ Sbjct: 1008 STVGRLAGTVTGKQERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVI 1067 Query: 777 QLGAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLN 826 + AE + E + R+ A+ L+ + + QK LR++VRD+ PL ++AR LN Sbjct: 1068 NVQAEERPEGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLN 1117 >SMc01375 [L] COG0587 DNA polymerase III, alpha subunit Sme Sinorhizobium meliloti Length = 1169 Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/829 (64%), Positives = 644/829 (77%), Gaps = 18/829 (2%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF--------------LANRLRVHGLSPGMTEED 59 RCSF KTR PILP FT GA+ L RL G++PG EED Sbjct: 293 RCSFMLKTRGPILPRFT-GASDDPEEAERAEVAELRRQAEEGLEERLAKLGMAPGYKEED 351 Query: 60 YSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDLD 119 Y +RLAFEL VI RMK+ GYFLIV+DFIKWAK IPVGPGRGSGAGSLVA+ LTITD+D Sbjct: 352 YRERLAFELGVIQRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVD 411 Query: 120 PMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQARG 179 PMRF+LLFERFLNPERVSMPDFDIDFCQDRR EVI+YVQ++YGR+QVAQIITFG+LQAR Sbjct: 412 PMRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARA 471 Query: 180 VLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDIA 239 LRDVGRVL+MPYGQVDK+ KLVP NPA P L++AIE EP+L+ +++PVVAR DIA Sbjct: 472 ALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEEPRLREEAEKEPVVARLLDIA 531 Query: 240 QRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLG 299 Q++EGL RHASTHAAGIVIGDRPLS+LVP+YRDP+SDMPVTQFNMKWVE AGLVKFDFLG Sbjct: 532 QKIEGLYRHASTHAAGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLG 591 Query: 300 LKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALIDM 359 LKTLTVL A+ + +R + +DLA++P+DD +Y+ L+RG+ VGVFQVES GMR+ALI M Sbjct: 592 LKTLTVLKTAIDFVGKRGIHIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGM 651 Query: 360 RPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQV 419 RPD EDIIALVALYRPGPM NIP Y ARKHG+EE E +HP ++ +LKET GVI+YQEQV Sbjct: 652 RPDCIEDIIALVALYRPGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQV 711 Query: 420 MQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLAK 479 MQIAQ ++GYSLG+ADLLRRAMGKKI+AEMDKQR FV GA+KNGV+K QA+ IF+LLAK Sbjct: 712 MQIAQVLSGYSLGEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAK 771 Query: 480 FADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGIK 539 FA+YGFNKSHAAAYA+VSY TAYMKAHYPVEFLAASMTL+++NTDK+++FR +A RLGI+ Sbjct: 772 FANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQ 831 Query: 540 VEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVSP 599 V AP++ S FE DN IYY+LAALKGVG AV+ I+ R + F SL DF R+ P Sbjct: 832 VVAPSVQTSHRHFETGDNRIYYSLAALKGVGESAVDHIVAVRGDRP-FASLEDFCLRIDP 890 Query: 600 RAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFG-GAADA 658 + +N+R+ ESL AAGAFD +RA + G D IL QR+ E SGQ+DMFG GAA Sbjct: 891 KLLNRRVFESLIAAGAFDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFGAGAATG 950 Query: 659 P-SIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGA 717 P I LP PWL +++L RE+ +GF+LS HPLD Y L ++RVQ++A+FS AVK GA Sbjct: 951 PEKIALPPYTPWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGA 1010 Query: 718 TAGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQ 777 AG++A TV S+ ER+T+TGNKMGI+ SD +G FEAVLFSE L QYRD+LEPG ++++ Sbjct: 1011 AAGRLAGTVTSKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVMT 1070 Query: 778 LGAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLN 826 + AE + E + R+ L+ + + QK LR++VRD PL SIA LN Sbjct: 1071 VDAEERPEGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASHLN 1119 >CC1926 [L] COG0587 DNA polymerase III, alpha subunit Ccr Caulobacter vibrioides Length = 1143 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/823 (56%), Positives = 586/823 (71%), Gaps = 6/823 (0%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFFLAN-----RLRVHGLSPGMTEEDYSKRLAFEL 68 RC+F R PILP F G + ++R+ GL+ EE+Y KRL FEL Sbjct: 273 RCAFMVHKRDPILPSFPTGDGRNEAEELEHQAREGLKMRLEGLTLSAPEEEYWKRLDFEL 332 Query: 69 DVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFE 128 +I +M + GYFLIVSDFIKW KA GIPVGPGRGSGAGSLVAWVLTITDLDP+RF LLFE Sbjct: 333 GIIKKMGFPGYFLIVSDFIKWGKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFE 392 Query: 129 RFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQARGVLRDVGRVL 188 RFLNPERVSMPDFD+DFCQ+RR EVI YVQE+YGRD+VAQIITFG+LQAR VLRDVGRV+ Sbjct: 393 RFLNPERVSMPDFDVDFCQERREEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVM 452 Query: 189 QMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRH 248 Q+P G VD+L K+VP NPAAPVTLAQAI+ EP+L+ + ED V+ D+A +LEGL R+ Sbjct: 453 QLPLGLVDRLCKMVPNNPAAPVTLAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRN 512 Query: 249 ASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDV 308 ASTHAAG+VIGDRPL++L PLY+DP+SD+P TQFNMKWVE AGLVKFDFLGLKTLTVLD Sbjct: 513 ASTHAAGLVIGDRPLTQLTPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDR 572 Query: 309 AVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDII 368 AVK LK+R ++DL LP DDA +Y++LA G VGVFQ+ESQGMR L MR E+I Sbjct: 573 AVKHLKKRGFEIDLGKLPFDDAKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEIT 632 Query: 369 ALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQVMQIAQQMAG 428 AL++LYRPGPM NI T+ K G + + LHP LE +LKET+GVI+YQEQVMQIAQ +AG Sbjct: 633 ALISLYRPGPMDNIDTFVDCKFGRKPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAG 692 Query: 429 YSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLAKFADYGFNKS 488 YSLG+ADLLRRAMGKK + EMD Q+ FV+GA + V + Q+ +IFEL+AKFA YGFNKS Sbjct: 693 YSLGEADLLRRAMGKKKKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKS 752 Query: 489 HAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGIKVEAPNINRS 548 HAAAYA +SY TA++KA+ PVEF AASM+L+L+NTDKL+ F +A+R GI V AP++NRS Sbjct: 753 HAAAYAFISYQTAWLKANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRS 812 Query: 549 GATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVSPRAVNKRIIE 608 GA FEV + + YAL A++ VG++A++ ++ R G F + DF R+ PR VNKR IE Sbjct: 813 GADFEVENGEVLYALGAIRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIE 872 Query: 609 SLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGAADAPSIMLPQIEP 668 +LA AGAFD++ NRA++ A AD ++A Q H GQ +FG A L + E Sbjct: 873 NLARAGAFDSIHKNRAQIVASADVLIAHAQSCHADRQGGQGGLFGSDPGAGRPRLSKTEN 932 Query: 669 WLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAGKVAATVVS 728 W D L E A+GF+L+GHPL+D L+R R AE + GA A ++ V Sbjct: 933 WNQVDLLDEELSAVGFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRR 992 Query: 729 RMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVR 788 R ER +++G K + LSDPTG +E + E L + RDVLEPG AV +++ A+ + +VR Sbjct: 993 RQERASQSGEKFAFVSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARDGEVR 1052 Query: 789 ARVLHAEPLDHAAAKTQKGLRIFVRDTKP-LDSIARRLNMPEA 830 AEP++ A GLR+ + + +D++ RRL +A Sbjct: 1053 FFGDDAEPIEKAVENVVAGLRVHLSPSAAEIDALKRRLEPAQA 1095