BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0166.0001.p (616 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC3500 Non COG 109 2e-23 yncD [P] COG1629 Outer membrane receptor proteins, mostly Fe tra... 77 1e-13 ECs2055 [P] COG1629 Outer membrane receptor proteins, mostly Fe ... 77 2e-13 STM1587 [P] COG1629 Outer membrane receptor proteins, mostly Fe ... 76 2e-13 Z2268 [P] COG1629 Outer membrane receptor proteins, mostly Fe tr... 76 2e-13 >CC3500 Non COG Length = 712 Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 135/570 (23%), Positives = 230/570 (40%), Gaps = 85/570 (14%) Query: 11 TTIDRSQFDNRPAFSVADVLRDSPGISIKQGNGPRDFGISIRGSNARNGFGIRNLVVFDD 70 + I + + NR ++ D+LRD+PG+ ++ G D +SIRGS N R L++ D Sbjct: 93 SVISQESYINRQTLALDDMLRDAPGVYAQRKWGG-DIRVSIRGSGIGNANHNRGLLIAQD 151 Query: 71 GFPVTQPDGLSRSDLIDPHAYGAIDVVRGPSSALYGNYATGGALNFRTRPGGTIDGVEYG 130 G P+ + DG + + DP +V RG ++ +G GGA+N T P G G + Sbjct: 152 GVPLNEADGFGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVT-PTGKDAGFQNR 210 Query: 131 V--DGGSFGYLNNYLAAGKKVGNFEGSLFASDARGDGYIGNSWFNTQTVNFLGTLQVTP- 187 + DGGS+G ++A ++ G+++ + A++ G+ S N Q G+L + Sbjct: 211 IRLDGGSYGLARQHVALARQSGDWDVFVAATNQTSQGWRSQSQQNIQ----FGSLNIGRS 266 Query: 188 --DDRFTVKLIN-NDLTTRLPIRSSLNQFYQNPFQQGCTTGATAAPGCATVTLFNNGFNA 244 +DR ++N +++ +P +L QF NP Q A +NG N Sbjct: 267 FGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLAN-----------DNGRN- 314 Query: 245 AAGTDKETAVQAGLGRDDRRTIVGGRWEHDFDNQTTWR--NQFVFDDRNINQPTGSTSAI 302 + V+ L +TTWR + VF+ G+ A+ Sbjct: 315 ------QRGVRGSL-------------------RTTWRLDDSLVFE--------GAVYAV 341 Query: 303 G---DFPSYNYMSDVVRR----------GDVFGLDSTTYFGGFYNTLTASSDTRNVMPGG 349 D P + + R G++ G + +FG +Y + S+ GG Sbjct: 342 WKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRGG 401 Query: 350 NATLGSLSSNLLSTTTNYGVRAREELKLTSALTAVAGIGWEATSLTGRNTAYSYAGAAGT 409 G+ +S L V + +T + VAG W Y G Sbjct: 402 R---GAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRD-----YQSFAIPGV 453 Query: 410 TTTAVTTADRQFQNTAPELALLYRLNSEWQFRGRVATGYGTPQVGNLFVLPSGASGNNTQ 469 +T AD+ + +P + LL++ Q + P G++ G + Sbjct: 454 ASTFNLKADKTYDWVSPRIGLLWQGEGGDQVFANLTRSVEPPNFGSMSPTNIGFA----P 509 Query: 470 LRTQKNLGYDVGADWTPNNALKVSVTGFYEFFKDELVSQATPLAGISYTFNAPRSEHRGV 529 +R+QK +VGA VT + K E++ + + TFNA ++ H+G+ Sbjct: 510 VRSQKAWTGEVGAR-GHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNADKTLHQGI 568 Query: 530 ELAADWKFLPGWRFSAAYTYLDEVYTEYVE 559 E A DW P WR +TY D + + V+ Sbjct: 569 EAALDWAVAPQWRIRQTWTYSDFRFKDDVQ 598 >yncD [P] COG1629 Outer membrane receptor proteins, mostly Fe transport Eco Escherichia coli K12 Length = 700 Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 22 PAFSVADVLRDSPGISIK-QGNGPRDFGISIRGSNARNGFGIRNLVVFDDGFPVTQPDGL 80 P ++++ L PG+ ++ + N +D +SIRG +R+ +GIR + ++ DG P T PDG Sbjct: 60 PRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQ 119 Query: 81 SRSDLIDPHAYGAIDVVRGPSSALYGNYATGGALNFRTRPGGTIDGVEYGVDGGSFG 137 ++ ID + ++V+RGP SALYGN A+GG +N T+ G +E GSFG Sbjct: 120 GQTSNIDLSSVQNVEVLRGPFSALYGN-ASGGVMNVTTQTGQQPPTIEASSYYGSFG 175 >ECs2055 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport Ecs Escherichia coli O157:H7 Length = 700 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 22 PAFSVADVLRDSPGISIK-QGNGPRDFGISIRGSNARNGFGIRNLVVFDDGFPVTQPDGL 80 P ++++ L PG+ ++ + N +D +SIRG +R+ +GIR + ++ DG P T PDG Sbjct: 60 PRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQ 119 Query: 81 SRSDLIDPHAYGAIDVVRGPSSALYGNYATGGALNFRTRPGGTIDGVEYGVDGGSFG 137 ++ ID + ++V+RGP SALYGN A+GG +N T+ G +E GSFG Sbjct: 120 GQTSNIDLSSVQNVEVLRGPFSALYGN-ASGGVMNVTTQTGQQPPTIEASSYYGSFG 175 >STM1587 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport Sty Salmonella typhimurium LT2 Length = 706 Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 2/131 (1%) Query: 22 PAFSVADVLRDSPGISIK-QGNGPRDFGISIRGSNARNGFGIRNLVVFDDGFPVTQPDGL 80 P ++++ L PG+ ++ + N +D ISIRG +R+ FG+R + ++ DG P T PDG Sbjct: 66 PRVNLSESLTSVPGLQVQNRQNYAQDLQISIRGFGSRSAFGVRGIRLYVDGIPATMPDGQ 125 Query: 81 SRSDLIDPHAYGAIDVVRGPSSALYGNYATGGALNFRTRPGGTIDGVEYGVDGGSFGYLN 140 + ID ++ ++V+RGP SALYGN A+GG +N T G +E GS+G Sbjct: 126 GQISNIDINSIQDVEVLRGPFSALYGN-ASGGVINVTTETGRQPPTLEASSYYGSYGSWR 184 Query: 141 NYLAAGKKVGN 151 L A +G+ Sbjct: 185 YGLKATGAMGD 195 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 416 TADRQFQNTAPELALLYRLNSEWQFRGRVATGYGTPQVGNLFVLPSGASGNNTQLRTQKN 475 + D + + P +L Y L W G+ TP + L G SG N L+ N Sbjct: 445 SGDASYHHWLPAGSLKYALTDAWNLYLAAGRGFETPTINELSYRADGQSGFNFDLKPSTN 504 Query: 476 LGYDVGADWTPNNALKVSVTGFYEFFKDELVSQATPLAGISYTFNAPRSEHRGVELAADW 535 +VG+ N L + ++ D+ + A+ + G + NA ++ +G ELA D Sbjct: 505 DTVEVGSKTRIGNGLLTA--ALFQTDTDDEIVVASSMGGRTTYKNAGKTRRQGAELALDQ 562 Query: 536 KFLPGWRFSAAYTYLDEVYTEYVESITNGAVFSFNRAGNKIPGISPNELTARLGY 590 +F WR A++T+LD Y ++ G N GN++PGI+ N A LG+ Sbjct: 563 RFAGDWRVKASWTWLDATYR---SNVCQGQ----NCDGNRMPGIARNMGFASLGF 610 >Z2268 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport EcZ Escherichia coli O157:H7 EDL933 Length = 700 Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 22 PAFSVADVLRDSPGISIK-QGNGPRDFGISIRGSNARNGFGIRNLVVFDDGFPVTQPDGL 80 P ++++ L PG+ ++ + N +D +SIRG +R+ +GIR + ++ DG P T PDG Sbjct: 60 PRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPXTMPDGQ 119 Query: 81 SRSDLIDPHAYGAIDVVRGPSSALYGNYATGGALNFRTRPGGTIDGVEYGVDGGSFG 137 ++ ID + ++V+RGP SALYGN A+GG +N T+ G +E GSFG Sbjct: 120 GQTSNIDLSSVQNVEVLRGPFSALYGN-ASGGVMNVTTQTGQQPPTIEASSYYGSFG 175