BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0031.p         (132 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0788 [S] COG3686 Predicted membrane protein Rso Ralstonia sol...    88   4e-18
NMA1176 [S] COG3686 Predicted membrane protein NmA Neisseria men...    67   9e-12
NMB0979 [S] COG3686 Predicted membrane protein Nme Neisseria men...    64   8e-11

>RSc0788 [S] COG3686 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 127

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 1   MTIAEWCVFGTLMLSLLTIVSVKWTGFRSFDNARPRDPDFYDDPIRSRALGAHQNGIEAF 60
           M IA WCV    +L  + I   ++TG R  DN +PR        +  RA GA QN  E F
Sbjct: 1   MPIALWCVLIAALLPYVCIQIARFTGPRR-DNRQPRQWAAGLTGVAQRANGAQQNHFEVF 59

Query: 61  PFFAFAVLLAEFRVGPLRLIDELAVLFLIVRIAYVFTYIGNRPTLRSILWSIGFAINIAI 120
           PFFA AVL+A     P+  ++ LAV F+ VR+ Y   Y+ +  T RS++W++G  + IA+
Sbjct: 60  PFFAVAVLVAILGGSPVDRVNGLAVAFIAVRVLYTVCYLADWATARSLVWTVGLVLTIAL 119

Query: 121 FLLPA 125
           F+ PA
Sbjct: 120 FVQPA 124


>NMA1176 [S] COG3686 Predicted membrane protein NmA Neisseria meningitidis
           Z2491
          Length = 127

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 1   MTIAEWCVFGTLMLSLLTIV-SVKWTGFRSFDNARPRDPDFYDDPIRSRALGAHQNGIEA 59
           MT A WC+    +L L     + K  GFR  DN  PRD         +RA  A QNG EA
Sbjct: 1   MTFAYWCILIAYLLPLFCAAYAKKAGGFRFKDNHNPRDFLARTQGTAARAHAAQQNGFEA 60

Query: 60  FPFFAFAVLLAEFRVGPLR-LIDELAVLFLIVRIAYVFTYIGNRPTLRSILWSIGFAINI 118
           F  FA AVL A       +  ++ LA LF++ R+A+++ YI ++  LRS++W  GF   +
Sbjct: 61  FAPFAAAVLTAHATGNAGQATVNTLAGLFILFRLAFIWCYIADKAALRSLMWVGGFVCTV 120

Query: 119 AIFLLPA 125
            +F++ A
Sbjct: 121 GLFVVAA 127


>NMB0979 [S] COG3686 Predicted membrane protein Nme Neisseria meningitidis
           MC58
          Length = 127

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 2/127 (1%)

Query: 1   MTIAEWCVFGTLMLSLLTIV-SVKWTGFRSFDNARPRDPDFYDDPIRSRALGAHQNGIEA 59
           MT A WC+    +L L     + K  GFR  DN  PR    +     +RA  A QNG EA
Sbjct: 1   MTFAYWCILIACLLPLFCAAYAKKAGGFRFKDNHNPRGFLAHTQGAAARAHAAQQNGFEA 60

Query: 60  FPFFAFAVLLAEFRVGPLR-LIDELAVLFLIVRIAYVFTYIGNRPTLRSILWSIGFAINI 118
           F  FA AVL A       +  I+ LA LF++ R+A+++ YI ++  +RS++W+ GFA  +
Sbjct: 61  FAPFAAAVLTAHATGNAAQSTINTLACLFILFRLAFIWCYIADKAAMRSLMWAGGFACTV 120

Query: 119 AIFLLPA 125
            +F+  A
Sbjct: 121 GLFVAAA 127