BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0021.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4402 [J] COG0251 Putative translation initiation inhibitor, y...   174   4e-44
SMc03796 [J] COG0251 Putative translation initiation inhibitor, ...   169   2e-42
SMa2201 [J] COG0251 Putative translation initiation inhibitor, y...    89   2e-18
Rv2704 [J] COG0251 Putative translation initiation inhibitor, yj...    83   2e-16
MT2777.1 [J] COG0251 Putative translation initiation inhibitor, ...    83   2e-16

>mll4402 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Mlo Mesorhizobium loti
          Length = 130

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 99/126 (78%), Gaps = 1/126 (0%)

Query: 3   RRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEAAL 62
           R+LISTGSPFEK AGYSRAV+ GD+ FV+GTTGYDYATMTMP  V +Q+RNC  TI  AL
Sbjct: 2   RKLISTGSPFEKTAGYSRAVVQGDWCFVSGTTGYDYATMTMPETVEAQTRNCLATIGKAL 61

Query: 63  KEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEIEV 122
            +GGF +AD+VRA YY+TD   VD  F + GE  GDIRPAATM IV  L KPEMK+EIEV
Sbjct: 62  ADGGFEVADVVRAHYYITDQAFVDVVFPILGETFGDIRPAATM-IVCQLNKPEMKIEIEV 120

Query: 123 TAKRRN 128
           TA RR+
Sbjct: 121 TALRRS 126


>SMc03796 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Sme Sinorhizobium meliloti
          Length = 126

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 98/126 (77%), Gaps = 1/126 (0%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           M+R+LIS+GSPFEK AGYSRAV  GD+ FV+GTTGYDYATMTMP  V  Q+RNC KTIE 
Sbjct: 1   MTRKLISSGSPFEKTAGYSRAVAKGDWCFVSGTTGYDYATMTMPETVEEQARNCLKTIEG 60

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           ALKE GF+++D+VR  YY+TDA   D  F + GE  G+IRPAATM IV  L +PEM +EI
Sbjct: 61  ALKEAGFSLSDVVRNHYYVTDASFADRVFPIFGETFGEIRPAATM-IVCDLIRPEMLIEI 119

Query: 121 EVTAKR 126
           EVTA R
Sbjct: 120 EVTAFR 125


>SMa2201 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Sme Sinorhizobium meliloti
          Length = 126

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           M  R+ + G P E++AGY++AVI G   +V+GTTG D  T   P +   Q+RN   +I+ 
Sbjct: 1   MKNRIFA-GVPSEEMAGYAKAVIVGTTVYVSGTTGRDPDTGNFPDNAAQQARNALASIDK 59

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           AL++ G ++A+ V +  Y+ D        AV GEV  DIRP +TMLI   +  P  KVEI
Sbjct: 60  ALRQAGGSLANAVVSRVYVVDQACAADVTAVLGEVFRDIRPTSTMLICE-IPAPGAKVEI 118

Query: 121 EVTA 124
           E+TA
Sbjct: 119 EITA 122


>Rv2704 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Mtu Mycobacterium tuberculosis H37Rv
          Length = 142

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 2   SRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEAA 61
           SR ++S+GS FE   GYSRAV  G    VAGTTG          D+ +Q+R+  + IE A
Sbjct: 4   SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG-------DDIAAQTRDALRRIEIA 56

Query: 62  LKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEIE 121
           L + G  +AD+VR   Y+TD         V  +  G IRP  +M+ V  L  P + VEIE
Sbjct: 57  LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116

Query: 122 VTA 124
             A
Sbjct: 117 ADA 119


>MT2777.1 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           MtC Mycobacterium tuberculosis CDC1551
          Length = 142

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 2   SRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEAA 61
           SR ++S+GS FE   GYSRAV  G    VAGTTG          D+ +Q+R+  + IE A
Sbjct: 4   SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG-------DDIAAQTRDALRRIEIA 56

Query: 62  LKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEIE 121
           L + G  +AD+VR   Y+TD         V  +  G IRP  +M+ V  L  P + VEIE
Sbjct: 57  LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116

Query: 122 VTA 124
             A
Sbjct: 117 ADA 119