BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0005.p         (183 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1663 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    78   9e-15
STM3121 [K] COG0583 Transcriptional regulator Sty Salmonella typ...    75   7e-14
YPO1929 [K] COG0583 Transcriptional regulator Ype Yersinia pestis      70   2e-12
SMb20009 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    70   3e-12
BMEII0820 [K] COG0583 Transcriptional regulator Bme Brucella mel...    69   7e-12

>AGl1663 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 309

 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 1   VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60
           +QL+E +    L K+  G LD AF+RPP      +    +L+E  + AL   H LA   Q
Sbjct: 140 LQLIEMEMRLQLAKIADGNLDFAFIRPPAPIPEGVATHVVLREPLMAALPENHPLAYALQ 199

Query: 61  IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120
           + L ++A +  I P +      H  T +  +EAG  P I     +  TI +MVA  LGVA
Sbjct: 200 LDLKNLAAETFITPRQPPDVGFHYNTIEACNEAGFQPVISPEGRDYTTITSMVAIGLGVA 259

Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDP 163
           +VPR    + +PGVR+VPL     +SA    LA A  K    P
Sbjct: 260 LVPRSLDCLRLPGVRYVPL----AASATTSDLAIAHRKTEASP 298


>STM3121 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium
           LT2
          Length = 292

 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 11/175 (6%)

Query: 1   VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60
           +QL E  T +L  +L  G+LD+AF+RP    + R +   L +E  V+ L+  H  A  KQ
Sbjct: 123 LQLEEGNTTQLADELNEGSLDVAFLRPGFTGNERFQLRLLSEEPMVIVLAETHPAAACKQ 182

Query: 61  IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120
           I L  + D+  ++  R      +D   K   +AG  P+I ++  +  +++N+V+A +GV+
Sbjct: 183 IALSILKDEFFLLFPREIGLSLYDAVIKACGKAGFEPKIGQLVPQISSVINLVSAEMGVS 242

Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLP---LAAAWLKGSRDP-VRDQVIAV 171
           +VP    ++ + GV + P+       A ++P   LA A+ +G   P +R+ ++ V
Sbjct: 243 MVPDSMRQVNVKGVVYRPV-------ADQMPVAKLALAYRRGDTSPTLRNFILKV 290


>YPO1929 [K] COG0583 Transcriptional regulator Ype Yersinia pestis
          Length = 292

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 1   VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60
           +QL E+ T RL   L  G+LD+AF+RP      R     L +E  ++ ++  H  A  ++
Sbjct: 123 LQLEEDNTTRLADGLNEGSLDVAFLRPGFAGSERFHLRMLSEEPMMIVMAENHPAASYEE 182

Query: 61  IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120
           I L    D+  ++  R      +D   +    AG  P I ++A +  +++N+VAA +GV+
Sbjct: 183 ISLSAFRDETFLLFPREIGLTLYDSVIESCRTAGFEPTIGQLAPQIASVINLVAAEMGVS 242

Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPV-RDQVIAVL 172
           IVP   +++ + GV +  +  +  ++     LA A+ +G   PV R+ V+ V 
Sbjct: 243 IVPASMSQVKVIGVVYRHIADQTPTA----KLALAYRRGDTSPVLRNFVLTVF 291


>SMb20009 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 309

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 6/180 (3%)

Query: 3   LLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQIV 62
           L E  T   +  L  G +D     PP     R++ +P+  ET + A+       R   + 
Sbjct: 124 LTEMATNEQVAALAEGTIDFGICHPPLGSSERLDIIPVADETLIAAIPED---GRTGPVT 180

Query: 63  LPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVAIV 122
           + ++A   L++      P  H      F EAG    IQ+ A    T++++VAA +G A++
Sbjct: 181 IAELARMGLVLFPAAQGPSLHASILNAFAEAGHDVSIQQPATRALTMLSLVAAGVGAALL 240

Query: 123 PRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVLQARLKSYARE 182
           PR T R++  GVRF P+   +G     LP+AA   +  R  + D V+ V    L++   E
Sbjct: 241 PRSTERISFKGVRFAPI---KGLQLPALPVAAIARRRPRPLIVDTVLGVFNHSLEAGTGE 297


>BMEII0820 [K] COG0583 Transcriptional regulator Bme Brucella melitensis
          Length = 299

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 4/170 (2%)

Query: 3   LLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQIV 62
           L E  T  L+ +L+ G LD AF+RP       +    L  E  +VAL   H LA  +++ 
Sbjct: 129 LTEMNTNLLIERLVRGELDTAFIRPGLEDPANVRMKRLADEPMLVALPSHHRLAVYERLP 188

Query: 63  LPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVAIV 122
           L  +A +P ++  R      +D        AG    + + A +  ++VN+VAA LGV+IV
Sbjct: 189 LSALAGEPFVLFPRIVGLSLYDDIAAACRMAGFEMNVTQEAPQMPSVVNLVAANLGVSIV 248

Query: 123 PRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVL 172
           P   A++ + GV + P+  +      RL LA+  +K  R PV D +I++L
Sbjct: 249 PAAIAQIRLDGVTYRPIEGE--PLVARLALAS--MKSLRSPVHDNLISLL 294