BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0164.0004.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20114 [H] COG0684 Demethylmenaquinone methyltransferase Sme S...    69   3e-12
AGl1765 [H] COG0684 Demethylmenaquinone methyltransferase Atu Ag...    61   5e-10

>SMb20114 [H] COG0684 Demethylmenaquinone methyltransferase Sme Sinorhizobium
           meliloti
          Length = 241

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 3   RNSAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQER 62
           R SAP ++     +    PIGCG VAV+P DVVV D++G V++P    D + AE  E   
Sbjct: 143 RPSAPTNLTLHQALDINVPIGCGDVAVWPGDVVVGDREGVVVVPAHLADEIAAEAVEMTA 202

Query: 63  MEAWIVNEVNNGAQLPGLYPMNA-ETKARYAASKK 96
            E ++  EV  G  + GLYP    ETK  +AA ++
Sbjct: 203 FEDFVTEEVLKGRSIIGLYPATKDETKTEFAAWRR 237


>AGl1765 [H] COG0684 Demethylmenaquinone methyltransferase Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 236

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%)

Query: 3   RNSAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQER 62
           R S+P ++     +    PIGCG   VFP D++V D D  ++IP    D V  E  E   
Sbjct: 138 RPSSPTNLTKHEAIEINGPIGCGDAPVFPGDIIVGDADCVIVIPAGIADEVATEAVEMTA 197

Query: 63  MEAWIVNEVNNGAQLPGLYPMNAE 86
            E ++V +V  G  + GLYP   E
Sbjct: 198 YEDFVVEQVKAGQTIIGLYPCTKE 221