BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0163.0005.p (381 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 457 e-128 AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 435 e-121 SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase... 433 e-121 CC3644 Non COG 427 e-119 PAE3418 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 90 9e-18 >mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Mlo Mesorhizobium loti Length = 335 Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/337 (66%), Positives = 263/337 (78%), Gaps = 3/337 (0%) Query: 23 MRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR 82 MR D+L P P GL C PG F IDPVRPV RALITHGHSDHAR+GH +VLATQ+TLD+M Sbjct: 1 MRASDLLHPRPEGLYCPPGDFFIDPVRPVNRALITHGHSDHARSGHRSVLATQQTLDIMA 60 Query: 83 LRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYKDAR 142 LRYGE+FAG+ QA GE I L +V+FHPAGHVLGSAQISV + TRIVASGDYK + Sbjct: 61 LRYGEDFAGTTQAARLGETIALDSVSVSFHPAGHVLGSAQISVEHQGTRIVASGDYKRQK 120 Query: 143 DPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSLGKA 202 D TC+PFE + CDVFI+EATFGLPVFRH E+ RLL S FPER+HLVGAY+LGKA Sbjct: 121 DATCAPFEPIRCDVFITEATFGLPVFRHPPDTEEIARLLKSAAQFPERSHLVGAYALGKA 180 Query: 203 QRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGM-KKAELAGTITLAPP 261 QRV+ LLR+AGYD P+Y+HGA+ +++ YYQ +GI LG L PA K + G I + PP Sbjct: 181 QRVMRLLRDAGYDRPLYIHGALARLSEYYQSQGIDLGVLEPATVEGGKDDFTGAIVVGPP 240 Query: 262 SATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGAGE 321 SA +D W RRFPDP++ FASGWMR+R RA+QGGVELPL+ISDHADWD LTATI TGA E Sbjct: 241 SAFADRWARRFPDPISCFASGWMRIRQRAKQGGVELPLIISDHADWDELTATIKETGAEE 300 Query: 322 IWVTHGQEDALVHWCRTKGFAARPLDLVGYGDEDEGE 358 IWVTHG+E+ALV WC +G AARPL LVGY EDEG+ Sbjct: 301 IWVTHGREEALVRWCELEGIAARPLHLVGY--EDEGD 335 >AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 352 Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/339 (63%), Positives = 251/339 (74%), Gaps = 4/339 (1%) Query: 22 TMRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMM 81 M+P+ +L P GL C G F+IDPVRPV RALITHGHSDHARAGHGAVLAT++TLD+M Sbjct: 16 NMKPEQLLNSTPKGLYCPAGDFYIDPVRPVARALITHGHSDHARAGHGAVLATRQTLDIM 75 Query: 82 RLRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYKDA 141 R+RYGE+F GS QA+ +GE + + V FHPAGHVLGSAQISV RIVASGDYK Sbjct: 76 RIRYGEDFCGSEQAVGFGETVEVNGVIVGFHPAGHVLGSAQISVEMNGLRIVASGDYKRG 135 Query: 142 RDPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSLGK 201 DPTC+PFE VPCDVFI+EATFGLPVF H E+ +LL S+K FP+R HLVGAYSLGK Sbjct: 136 IDPTCAPFETVPCDVFITEATFGLPVFHHPLPRVEIGKLLTSIKQFPDRTHLVGAYSLGK 195 Query: 202 AQRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKK--AELAGTITLA 259 AQRVI LLR+ GY PIY+HGA+ ++ YY +GI LG+LRPA K A G I + Sbjct: 196 AQRVIRLLRDNGYADPIYIHGALARLCDYYVSQGIDLGDLRPATLEKSNPAAFKGAIVVG 255 Query: 260 PPSATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGA 319 PPSA + W RRF +P+ AFASGWM VR RA+QGGVELPLVISDH DW L TI G Sbjct: 256 PPSAFQERWARRFNEPLIAFASGWMMVRQRAKQGGVELPLVISDHCDWPELLETITEIGP 315 Query: 320 GEIWVTHGQEDALVHWCRTKGFAARPLDLVGYGDEDEGE 358 +WVTHG+E+ALV WC +G AA+PL LVGY EDEG+ Sbjct: 316 QAVWVTHGREEALVRWCELQGIAAKPLHLVGY--EDEGD 352 >SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Sme Sinorhizobium meliloti Length = 336 Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/336 (62%), Positives = 253/336 (75%), Gaps = 2/336 (0%) Query: 23 MRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR 82 M+P +L P P GL C+ G F+IDPV+PVERALITHGHSDHARAGHG VLAT+ETLD+MR Sbjct: 1 MKPDALLFPAPKGLYCQHGDFYIDPVQPVERALITHGHSDHARAGHGHVLATRETLDIMR 60 Query: 83 LRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYKDAR 142 LRYG++F G+ +GE I +G V F PAGHVLGSAQISV TRIV SGDYK Sbjct: 61 LRYGDDFCGASDVARFGETISIGGVRVRFQPAGHVLGSAQISVEADGTRIVVSGDYKRRP 120 Query: 143 DPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSLGKA 202 DPTC FE V CDVFI+EATFGLPVF H D GE+ RLL S++ FPERAH+VGAY+LGKA Sbjct: 121 DPTCPSFEPVACDVFITEATFGLPVFHHPDDKGEIARLLQSLRQFPERAHVVGAYALGKA 180 Query: 203 QRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPAR--GMKKAELAGTITLAP 260 QR+IAL+R+ GYD PI++HGA+ ++ YYQ +GI LG++RPA + +LAG I L P Sbjct: 181 QRLIALIRQQGYDEPIHIHGALARLCEYYQSQGIDLGDIRPATLGPENRQDLAGAIVLGP 240 Query: 261 PSATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGAG 320 P+A ++ W RRF DP+ FASGWM +R RA+Q GVELPLVISDH DW LTATI Sbjct: 241 PAAFAERWARRFADPLAIFASGWMLIRQRAKQRGVELPLVISDHCDWAELTATIREIAPA 300 Query: 321 EIWVTHGQEDALVHWCRTKGFAARPLDLVGYGDEDE 356 E+WVTHG+E+ALV WC+ +G ARPL LVGY DE E Sbjct: 301 EVWVTHGREEALVRWCQLQGIPARPLHLVGYDDEGE 336 >CC3644 Non COG Length = 342 Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/342 (62%), Positives = 254/342 (74%), Gaps = 2/342 (0%) Query: 18 AYIGTMRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQET 77 +Y ++P+D+L P PAGL C PG F+IDPVRPV+RA++THGH+DHARAGHG V AT ET Sbjct: 2 SYPDVIKPEDLLCPRPAGLYCPPGDFYIDPVRPVDRAVVTHGHADHARAGHGVVAATPET 61 Query: 78 LDMMRLRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGD 137 L +M +RYGE+FAG + I YGE +VT PAGHVLGSAQ V K +V SGD Sbjct: 62 LAIMAVRYGEDFAGRREPIPYGESFTRDGVSVTLVPAGHVLGSAQAVVRWKGLTMVVSGD 121 Query: 138 YKDARDPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAY 197 YK RDPTC+ FE VPCDVFI+EATFGLPVFRH D AGE+ LL SV FP+R HLVGAY Sbjct: 122 YKRRRDPTCARFEPVPCDVFITEATFGLPVFRHPDDAGEIRSLLLSVAQFPDRCHLVGAY 181 Query: 198 SLGKAQRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGM-KKAELAGTI 256 +LGKAQRVI LLREAG+D IY+HGA+E++ Y+ G+ LG L PA K AG I Sbjct: 182 ALGKAQRVIRLLREAGWDKTIYVHGALERLNALYEAHGVDLGPLAPATASGPKDAFAGQI 241 Query: 257 TLAPPSATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAA 316 +APPSA +D W+RRFPDPV FASGWMRVRARARQ GVELPL++SDHADWD LT T+ Sbjct: 242 VIAPPSAIADRWSRRFPDPVDCFASGWMRVRARARQRGVELPLILSDHADWDELTGTLDE 301 Query: 317 TGAGEIWVTHGQEDALVHWCRTKGFAARPLDLVGYGDEDEGE 358 GE+W+THG+E+AL WC+ +G AR L LVGY DE EGE Sbjct: 302 LRPGEVWITHGREEALERWCQLEGIPARALRLVGYEDE-EGE 342 >PAE3418 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Pya Pyrobaculum aerophilum Length = 314 Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 93/320 (29%), Positives = 131/320 (40%), Gaps = 55/320 (17%) Query: 43 FHIDPVRP----VERALITHGHSDHA--RAGHGAVLATQETLDMMRLRYGENFAGSVQAI 96 F +DP P V+ LITHGHSDH A V+AT+ET M +R+G V + Sbjct: 18 FVVDPTGPLTGPVDFVLITHGHSDHVSKHAYRHTVVATRETFSAMSVRFGNPPPRRV-TV 76 Query: 97 AYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYK-------DARDPTCSPF 149 A G + +G + AGH+LGS +I+ +GD+ DA +P P Sbjct: 77 APGNVLEIGGVQIAVLEAGHILGSVMYLAEVDGVQILVTGDFNTAGSILTDAAEPIERP- 135 Query: 150 ELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKL-FPERAHLVGAYSLGKAQRVIAL 208 DV + EAT+G P + + A L V+ E + AY LGKAQ + L Sbjct: 136 -----DVLVMEATYGDPSYVFPNRAEVYEEFLDVVERGISEGGVAISAYPLGKAQEIAKL 190 Query: 209 LREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKKAELAGTITLAPPSATS-DV 267 L GA + Y + GIP G + + + APP+ DV Sbjct: 191 LGNKA--------GAHASVAKYNKALGIPTGN------GDEVIVVPNLKAAPPNYFKIDV 236 Query: 268 WTRRFPDPVTAFASGWM---RVRARARQGGVE-LPLVISDHADWDGLTATIAATGAGEIW 323 SGW R+R A GV +PL SDH+D+ L A ++ Sbjct: 237 -------------SGWYADERLRKNAISRGVYGIPL--SDHSDFPSLVEFATAASPRLVY 281 Query: 324 VTHGQEDALVHWCRTKGFAA 343 +G + L + R G A Sbjct: 282 TVYGFSERLARYLRKIGLKA 301