BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0003.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4094 [K] COG2207 AraC-type DNA-binding domain-containing prote... 133 4e-31 CC2399 Non COG 112 2e-24 PA4070 [K] COG2207 AraC-type DNA-binding domain-containing prote... 94 4e-19 Cgl2624 [K] COG2207 AraC-type DNA-binding domain-containing prot... 85 2e-16 AGl1441 [K] COG2207 AraC-type DNA-binding domain-containing prot... 82 1e-15 >PA4094 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 319 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 12/312 (3%) Query: 6 TTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSSRQRVL 65 +T+D P +RLA W+D + V L C S F + L ++ + + + V Sbjct: 13 STQDIPLEQRLAFWEDYNASILVGLKCSSYSQAGFAATQDNLCLERLRLARIGGNEHVVE 72 Query: 66 RTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNAEFTQT 125 R S I ++ + +L + QD ++QPGE Y T +PY F+ Q Sbjct: 73 RDRSMIRAVPKESIFVSLVQGSQSFFYQDNGCNLLQPGELVIYRTDKPYLFGFSGPMRQF 132 Query: 126 IFQVPRAMLHRR----FAGTQGLTATTFTSDRPVQRLAWQFISGLS-EIADKLDPDNAIR 180 IF +P+ R F G + A + PVQRL + + + + D ++A R Sbjct: 133 IFDIPQDDFAERCLRDFKGPLKIGAES-----PVQRLLVRTLGERTRDFLDSPHGEDAER 187 Query: 181 LADQAADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGIS 240 ++A DLLA +S+ G AS ++ L K ++ HL P L AAA G+S Sbjct: 188 YQEEAYDLLASIISDHAGEHR--ASALGASYLLAAKQYIQQHLDEPALSCERVAAATGVS 245 Query: 241 PRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVF 300 R++ L A E +S R++ +RLER ++ LASP + E+A+ GF+ +HF R F Sbjct: 246 SRHLARLFAQEGSSPGRYLQERRLERARQLLASPQGRRLDVAEVAYRHGFSSQAHFARAF 305 Query: 301 RDHYGLSPRDWR 312 + YG++P + R Sbjct: 306 KARYGMTPSEAR 317 >CC2399 Non COG Length = 312 Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 133/304 (43%), Gaps = 5/304 (1%) Query: 12 THRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSSRQRVLRTPSRI 71 T L W +V F L +D AF G+I LG + + V+SS V R R Sbjct: 13 TQAGLDAWNALVASTFDNLVVDADR-EAFEGSIDVRDLGGMDLARVASSAAVVRR--GRA 69 Query: 72 ARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNAEFTQTIFQVPR 131 + + L G QDGRE V+ G+ D RPY +RF+ + ++P Sbjct: 70 SWTRRPYFKLHLQDVGRSLNSQDGREAVLDEGDLMLCDPARPYTIRFDDPNRMLVLRIPS 129 Query: 132 AMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIRLADQAADLLAM 191 L R + L D L FI L A + + D A LL+ Sbjct: 130 ERLADRMDDPEALCGRRLAGDSLAGALLTSFIRTLWTNAGRGCAPVGEAVQDAALSLLSA 189 Query: 192 AMSERLGGAALPASTHRS-ALLYRLKAHVLAHLPNPELGLTETAAALGISPRYVNSLLAD 250 A E G A P S R+K + +L +PEL + A ALG+SPRYV + A Sbjct: 190 AAREGEGEAPAPRDLDASHGAGARIKRFIDDNLCDPELSVGRVAGALGVSPRYVQMVFAG 249 Query: 251 EDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVFRDHYGLSPRD 310 T+ ++ +RLER R L +I +++F GFNDLSHF R F+ YG+ PR+ Sbjct: 250 MATTPLAYIRRKRLERAARALREDGVGC-NITDLSFGLGFNDLSHFSRAFKAFYGVGPRE 308 Query: 311 WRQS 314 +R S Sbjct: 309 FRAS 312 >PA4070 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 316 Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 85/323 (26%), Positives = 130/323 (40%), Gaps = 31/323 (9%) Query: 12 THRRLALWQDIVCDVFVQLDCKSDLG-TAFHGAITSAQLGAVKCSVVSSSRQRVLRTPSR 70 H W + V + + + L T F G I+ LG ++ + + ++ R+ R + Sbjct: 7 AHNSFEAWNQALRQVCGRFESQPALNRTLFIGDISRQDLGGLELAQIRTNAGRIARQATH 66 Query: 71 IARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNAEFTQTIFQVP 130 + + RSG + Q G + PGE A D+ E+ + T F + Sbjct: 67 ADHDDDRHCFLVVQRSGHAQLRQGGDSIELAPGEMALMDSAGGCEIIPHGLIEHTSFHLS 126 Query: 131 RAMLHRRFAGTQ---GLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIRLADQAAD 187 R + R +Q G + S R + L Q +G +L P +AD+ Sbjct: 127 REEVCRHLPPSQRAFGKLSPNCASGRLLSLLVQQVCAG------ELQP---WAVADEGG- 176 Query: 188 LLAMAMSERLGGAALPASTHRSALL---------YRLKAH----VLAHLPNPELGLTETA 234 A+ E L PA H L Y L+ H + L P L A Sbjct: 177 ----ALQEALIALLGPALQHAGEELEGPLAGLYGYSLRRHAERLIEQSLQEPRLSPDMLA 232 Query: 235 AALGISPRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLS 294 L IS R + L ++ S R++L QRL R DL +P I IAF WGF+D + Sbjct: 233 GRLRISVRQLYRLFEEQGDSVCRYILRQRLSRSAADLGNPRLRGESITSIAFKWGFSDSA 292 Query: 295 HFGRVFRDHYGLSPRDWRQSRLP 317 HF R F+ + +SP+D+R LP Sbjct: 293 HFSRAFKKQFEVSPKDYRAGALP 315 >Cgl2624 [K] COG2207 AraC-type DNA-binding domain-containing proteins Cgl Corynebacterium glutamicum Length = 310 Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 133/307 (43%), Gaps = 17/307 (5%) Query: 18 LWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSSRQRVLRTPSRIARASED 77 +W+ + LD ++ + T+ L +++ + V + Q V R+ S I+ Sbjct: 1 MWEGHNARALLPLDIRTIDDRPMQASETNLHLPSMRMASVFGTSQFVERSESFISENPTG 60 Query: 78 FVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNAEFTQTIFQVPRAMLHRR 137 V G G ++PG+ YD RP+ FN F + + +P+ + Sbjct: 61 VVAIFFATEGEAVFFHRGGHVALRPGQAIVYDADRPFLRGFNNRFRELVLTIPKQR-YLE 119 Query: 138 FAGTQG--------LTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIRLADQAADLL 189 G++G AT +++ + RL + + + E + D++ L +D+ Sbjct: 120 IVGSKGPELPAIFEFGATGTANEQALARLVQESLHRI-ESGEPKHIDSSGPLGKPWSDIE 178 Query: 190 AMA---MSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGISPRYVNS 246 A + LG A ++ L+ + + ++ +L + AAA+GIS R ++ Sbjct: 179 HEAHGLIRNVLGDA----TSSEEGLISAAQRFIDINISESDLQASRIAAAVGISERQLSR 234 Query: 247 LLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVFRDHYGL 306 + +D + R+VL RL+ K L++P + EI +GF SHF R FR+ + + Sbjct: 235 IFSDSGQTIGRYVLNTRLDFAKEALSTPERDKVSVSEIGKRFGFASPSHFSRTFRERFEM 294 Query: 307 SPRDWRQ 313 +P WR+ Sbjct: 295 TPLQWRK 301 >AGl1441 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 346 Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 6/309 (1%) Query: 5 FTTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSSRQRV 64 F T P + LW+D + +V +S F ++ +A +G V SS Q Sbjct: 15 FDTRHVPKRDAMGLWRDSI-NVLFDARLRSSQDDGFFASVDAAFIGNVALGRTQSSAQDF 73 Query: 65 LRTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNAEFTQ 124 R+ +++AR D L SG + ET PG+ D +P + Sbjct: 74 DRSRNKLARDGMDGFLLQFYASGKSMSRRGTGETA-GPGDLYIIDMAQPLATA-TTDHDH 131 Query: 125 TIFQVPRAMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIRLADQ 184 VPR +L R G+ + P+ L + ++ + D ++ ++ Sbjct: 132 LSLVVPRRLLEGRLIGSGNHHERVLPAGLPLVSLLRETMTSIYRHFDVMNANDGAATVSP 191 Query: 185 AADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGISPRYV 244 +L A++ + A + AL ++ ++ HL +P L + + G+S R V Sbjct: 192 LLELATAAINNHV--REDNAQGVQRALRASIRRYIDNHLLDPALSVEKVMGEFGVSRRTV 249 Query: 245 NSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVFRDHY 304 L + F + +RLER L +P +H I ++A A+GF + +F RVF+ + Sbjct: 250 YRLF-EPLGGFSACITHRRLERAMDFLRAPQSSHMTIADVAAAYGFTNPENFSRVFKKTF 308 Query: 305 GLSPRDWRQ 313 GLSPR R Sbjct: 309 GLSPRQIRH 317