BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0050.p (566 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3972 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 425 e-118 AGc2410 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu... 395 e-109 Rv0672 [I] COG1960 Acyl-CoA dehydrogenases Mtu Mycobacterium tub... 392 e-109 MT0701 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tub... 392 e-109 SMc01359 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium m... 390 e-108 >PA3972 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 549 Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust. Identities = 240/545 (44%), Positives = 315/545 (57%), Gaps = 14/545 (2%) Query: 20 THEVRNQARPALGFNAFDDDRALSGLIATI-APWATDKLSALGAHAGSESVQEAARLANK 78 THEV NQ G N + D L + WA ++L G AG + A LAN+ Sbjct: 9 THEVTNQVPSLDGANLYRLDLPLQEWVRRYQGGWAEERLQRYGELAGG-PLMAAGFLANQ 67 Query: 79 HEPTLLTHDRYGNRNDWVEFHPAWHELMALAFRSEVHSLAWSTREPHGHLARAALSYLWN 138 H+P +HDRYGNR D VEFHPA+HELM A E+ SL W+ P +ARA LSYL + Sbjct: 68 HKPEFHSHDRYGNRVDLVEFHPAYHELMRAAIEHELPSLPWTDPRPGAQVARAGLSYLHS 127 Query: 139 QIENGVGCPTGMAYAAIAGFSGKPQF-NLWRERTLAADYDPRRLPIEAKRAAVIGYAMTE 197 Q E G GCP M YA++ + W + L+ +YDPR +P+E K IG AMTE Sbjct: 128 QAEAGTGCPLTMTYASVPAIRLQADLAEKWLPKILSREYDPRNVPMEQKAGVTIGMAMTE 187 Query: 198 KQGGSDLRETQTTARFVERGAHGEIYAITGHKWFFSVPVADGFYTLARTQSGVSCLFVPR 257 KQGG+D+R T A V G+ Y + GHKWF S P+ D F TLA T G++C +PR Sbjct: 188 KQGGTDVRANTTRAYPVGIPGPGQAYELVGHKWFCSAPMCDAFLTLAYTDKGLTCFLLPR 247 Query: 258 LLPDGSANRIHIQRLKDKCGNRSNASSEIEYHDTWSILVGEEGRGIAEILSHAHLTRLDF 317 PDGS N+ +IQRLKDK GN SNASSEIEY + +VGEEGRG+ I+ +TR D Sbjct: 248 HRPDGSRNQFYIQRLKDKLGNWSNASSEIEYRGALAWMVGEEGRGVPTIIEMVAMTRFDC 307 Query: 318 AVGSAGLMRQALSFALNHAQTRTAFGKPTSELPMQRNVLADLALESEAAMLGAFRVARAT 377 +GS+ LMRQAL+ A +H R G+ +E P+ +NVLADLALESEAA+ R+ A Sbjct: 308 MIGSSALMRQALTQAAHHCAYRKVGGRVLAEQPLMQNVLADLALESEAALALTLRMGHAL 367 Query: 378 DGLQTSEHERLLARVATPVMKFWNCQRAPAFTYECLQVHGGNGFIMENPMARLYREAPLN 437 D + E+ AR+ T V K+W C+RAPA E + GG G++ E + RLYREAP+N Sbjct: 368 DRAHDEQEEK-FARLVTAVGKYWICKRAPAMINEASECMGGAGYVEETILPRLYREAPVN 426 Query: 438 SIWEGTSNMMCMDVLRAMQRDANCRDAFVDELRASRGLNPVYDRSTDDLADRLRARYPDD 497 SIWEG+ N+ C+DVLRA+ ++ DA EL G D L+A + D Sbjct: 427 SIWEGSGNVQCLDVLRALSKEPGVLDALFAELGDGHG-----DARLAAHIGNLKAAFADT 481 Query: 498 G----HARALVTRMAHALQAAEMLRHGDTAAADLFVQSRLDADGMHVFGGLPPSEGLSRI 553 AR L +A ALQA +L G++A +D F+ SRL DG V+G LP + + Sbjct: 482 ADIQYRARQLTEDVAIALQAKLLLEAGNSAVSDAFIGSRL-GDGGRVYGTLPRGVEVEAL 540 Query: 554 VARAS 558 +ARA+ Sbjct: 541 LARAT 545 >AGc2410 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 550 Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust. Identities = 225/524 (42%), Positives = 305/524 (58%), Gaps = 10/524 (1%) Query: 25 NQARPALGFNAFDDDRALSGLIATIAPWATDKLSALGAHAGSESVQEAARLANKHEPTLL 84 NQ G NA+ D + L + ++ D+ LG + S QE AR+AN+ P L Sbjct: 15 NQPSLWSGINAYRSDPLIVDLTSGLSRNLRDEYDQLGRYVTSHEAQELARMANQGVPQLH 74 Query: 85 THDRYGNRNDWVEFHPAWHELMALAFRSEVHSLAW-STREPHG--HLARAALSYLWNQIE 141 TH G R D VEFHPAWH LM + S +HS W ++ + G H ARA YL +Q+E Sbjct: 75 THGPRGERLDQVEFHPAWHALMRRSMSSGLHSSVWENSPDTRGSEHKARATKFYLTSQLE 134 Query: 142 NGVGCPTGMAYAAIAGFSGKPQFNL-WRERTLAADYDPRRLPIEAKRAAVIGYAMTEKQG 200 G CP M A++A P+ W + L+ YD + P K A +G MTEKQG Sbjct: 135 AGHLCPLTMTSASVAAIMTSPRVQKEWMPKILSRKYDSAQKPALQKTAVTVGMGMTEKQG 194 Query: 201 GSDLRETQTTARFVERGAHGEIYAITGHKWFFSVPVADGFYTLARTQSGVSCLFVPRLLP 260 G+D+R +TTA V G IY ++GHKWF S P++DGF LA+ G+ C VPR L Sbjct: 195 GTDVRANRTTAERVGEG----IYRLSGHKWFLSAPMSDGFVMLAQMGDGMGCFLVPRYLE 250 Query: 261 DGSANRIHIQRLKDKCGNRSNASSEIEYHDTWSILVGEEGRGIAEILSHAHLTRLDFAVG 320 DGS N +H QRLKDK GNRSNAS+E+E+ D + L+G+ G GI IL LTRLD A+ Sbjct: 251 DGSKNGLHFQRLKDKLGNRSNASAEVEFTDAFGYLLGDPGSGIRTILDMVTLTRLDCALA 310 Query: 321 SAGLMRQALSFALNHAQTRTAFGKPTSELPMQRNVLADLALESEAAMLGAFRVARATDGL 380 SAG+MR +L+ A++ A+ R+ FGK P+ VLAD+AL+ AA +FR+A A D Sbjct: 311 SAGMMRASLAEAVHFARGRSVFGKMLVSQPIMTRVLADMALDVAAATALSFRLATAFDAA 370 Query: 381 QTSEHERLLARVATPVMKFWNCQRAPAFTYECLQVHGGNGFIMENPMARLYREAPLNSIW 440 + + E ARV TP++K+W C+ APA YE ++ GGNG++ E P+AR YREAP+N+IW Sbjct: 371 RNNPAEAAYARVMTPIVKYWCCKIAPALIYEAMECLGGNGYVEERPIARHYREAPVNAIW 430 Query: 441 EGTSNMMCMDVLRAMQRDANCRDAFVDELRASRGLNPVYDRSTDDLADRLRARYPDDGHA 500 EG+ N+M +DVLR +QR + D L R L P ++TD L + D+G A Sbjct: 431 EGSGNVMALDVLRVLQRGKDLFDLVFQTL--ERDLGPAGKKTTDVLRAAIALAERDEGAA 488 Query: 501 RALVTRMAHALQAAEMLRHGDTAAADLFVQSRLDADGMHVFGGL 544 R LV + A A AAE+ R G AD F+++RL H +G L Sbjct: 489 RLLVEQFALAAAAAELCRLGAGKIADAFLETRLAGGWRHTYGML 532 >Rv0672 [I] COG1960 Acyl-CoA dehydrogenases Mtu Mycobacterium tuberculosis H37Rv Length = 542 Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust. Identities = 223/542 (41%), Positives = 306/542 (56%), Gaps = 7/542 (1%) Query: 20 THEVRNQARPALGFNAFDDDRALSGLIATIAPWATDKLSALGAHAGSESVQEAARLANKH 79 TH V NQ P +N + LI W D+++ +GA + S Q LA+++ Sbjct: 4 THVVTNQVPPLENYNPASSPVLIEALIQEGGQWGLDEVNEVGAISASCQAQRWGELADRN 63 Query: 80 EPTLLTHDRYGNRNDWVEFHPAWHELMALAFRSEVHSLAWSTREPHGHLARAALSYLWNQ 139 P L THD YG R D VE+ PA+HELM A +H+ W+ P H+ RAA + +W Sbjct: 64 RPILHTHDAYGYRVDEVEYDPAYHELMRTAITHGMHAAPWADDRPGAHVVRAAKTSVWT- 122 Query: 140 IENGVGCPTGMAYAAIAGFSGKPQFNLWRERTLAA-DYDPRRLPIEAKRAAVIGYAMTEK 198 +E G CP M YA + + E L + +YDP P K G +MTEK Sbjct: 123 VEPGHICPISMTYAVVPALRYNSELAAVYEPLLTSREYDPELKPATTKAGITAGMSMTEK 182 Query: 199 QGGSDLRETQTTARFVERGAHGEIYAITGHKWFFSVPVADGFYTLARTQSGVSCLFVPRL 258 QGGSD+R T A G+ Y++TGHKWF S P+ D F LA+ G+SC +PR+ Sbjct: 183 QGGSDVRAGTTQATPNADGS----YSLTGHKWFTSAPMCDIFLVLAQAPDGLSCFLLPRV 238 Query: 259 LPDGSANRIHIQRLKDKCGNRSNASSEIEYHDTWSILVGEEGRGIAEILSHAHLTRLDFA 318 LPDG+ NR+ +QRLKDK GN +NASSE+EY + LVGEEGRG+ I+ +LTRLD A Sbjct: 239 LPDGTRNRMFLQRLKDKLGNHANASSEVEYDGAVAWLVGEEGRGVPTIIEMVNLTRLDCA 298 Query: 319 VGSAGLMRQALSFALNHAQTRTAFGKPTSELPMQRNVLADLALESEAAMLGAFRVARATD 378 +GSA MR L+ A++HAQ R AFG + P+ RNVLADLA+E+EAA + A R+A ATD Sbjct: 299 LGSATSMRTGLTRAVHHAQHRKAFGAYLIDQPLMRNVLADLAVEAEAATIVAMRMAGATD 358 Query: 379 -GLQTSEHERLLARVATPVMKFWNCQRAPAFTYECLQVHGGNGFIMENPMARLYREAPLN 437 ++ +E E LL R+ K+W C+R+ A E L+ GGNG++ ++ M RLYREAPL Sbjct: 359 NAVRGNETEALLRRIGLAAAKYWVCKRSTAHAAEALECLGGNGYVEDSGMPRLYREAPLM 418 Query: 438 SIWEGTSNMMCMDVLRAMQRDANCRDAFVDELRASRGLNPVYDRSTDDLADRLRARYPDD 497 IWEG+ N+ +D LRAM C + DEL S G +P D + L +L Sbjct: 419 GIWEGSGNVSALDTLRAMATRPACVEVLFDELARSAGQDPRLDGHVERLRPQLGDLDTIG 478 Query: 498 GHARALVTRMAHALQAAEMLRHGDTAAADLFVQSRLDADGMHVFGGLPPSEGLSRIVARA 557 AR + + ALQ + ++RHG A A+ F+ +RL +G +P L+ I+ RA Sbjct: 479 YRARKIAEDICLALQGSLLVRHGHPAVAEAFLATRLGGQWGGAYGTMPAGLDLAPILERA 538 Query: 558 SV 559 V Sbjct: 539 LV 540 >MT0701 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tuberculosis CDC1551 Length = 542 Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust. Identities = 223/542 (41%), Positives = 306/542 (56%), Gaps = 7/542 (1%) Query: 20 THEVRNQARPALGFNAFDDDRALSGLIATIAPWATDKLSALGAHAGSESVQEAARLANKH 79 TH V NQ P +N + LI W D+++ +GA + S Q LA+++ Sbjct: 4 THVVTNQVPPLENYNPASSPVLIEALIQEGGQWGLDEVNEVGAISASCQAQRWGELADRN 63 Query: 80 EPTLLTHDRYGNRNDWVEFHPAWHELMALAFRSEVHSLAWSTREPHGHLARAALSYLWNQ 139 P L THD YG R D VE+ PA+HELM A +H+ W+ P H+ RAA + +W Sbjct: 64 RPILHTHDAYGYRVDEVEYDPAYHELMRTAITHGMHAAPWADDRPGAHVVRAAKTSVWT- 122 Query: 140 IENGVGCPTGMAYAAIAGFSGKPQFNLWRERTLAA-DYDPRRLPIEAKRAAVIGYAMTEK 198 +E G CP M YA + + E L + +YDP P K G +MTEK Sbjct: 123 VEPGHICPISMTYAVVPALRYNSELAAVYEPLLTSREYDPELKPATTKAGITAGMSMTEK 182 Query: 199 QGGSDLRETQTTARFVERGAHGEIYAITGHKWFFSVPVADGFYTLARTQSGVSCLFVPRL 258 QGGSD+R T A G+ Y++TGHKWF S P+ D F LA+ G+SC +PR+ Sbjct: 183 QGGSDVRAGTTQATPNADGS----YSLTGHKWFTSAPMCDIFLVLAQAPDGLSCFLLPRV 238 Query: 259 LPDGSANRIHIQRLKDKCGNRSNASSEIEYHDTWSILVGEEGRGIAEILSHAHLTRLDFA 318 LPDG+ NR+ +QRLKDK GN +NASSE+EY + LVGEEGRG+ I+ +LTRLD A Sbjct: 239 LPDGTRNRMFLQRLKDKLGNHANASSEVEYDGAVAWLVGEEGRGVPTIIEMVNLTRLDCA 298 Query: 319 VGSAGLMRQALSFALNHAQTRTAFGKPTSELPMQRNVLADLALESEAAMLGAFRVARATD 378 +GSA MR L+ A++HAQ R AFG + P+ RNVLADLA+E+EAA + A R+A ATD Sbjct: 299 LGSATSMRTGLTRAVHHAQHRKAFGAYLIDQPLMRNVLADLAVEAEAATIVAMRMAGATD 358 Query: 379 -GLQTSEHERLLARVATPVMKFWNCQRAPAFTYECLQVHGGNGFIMENPMARLYREAPLN 437 ++ +E E LL R+ K+W C+R+ A E L+ GGNG++ ++ M RLYREAPL Sbjct: 359 NAVRGNETEALLRRIGLAAAKYWVCKRSTAHAAEALECLGGNGYVEDSGMPRLYREAPLM 418 Query: 438 SIWEGTSNMMCMDVLRAMQRDANCRDAFVDELRASRGLNPVYDRSTDDLADRLRARYPDD 497 IWEG+ N+ +D LRAM C + DEL S G +P D + L +L Sbjct: 419 GIWEGSGNVSALDTLRAMATRPACVEVLFDELARSAGQDPRLDGHVERLRPQLGDLDTIG 478 Query: 498 GHARALVTRMAHALQAAEMLRHGDTAAADLFVQSRLDADGMHVFGGLPPSEGLSRIVARA 557 AR + + ALQ + ++RHG A A+ F+ +RL +G +P L+ I+ RA Sbjct: 479 YRARKIAEDICLALQGSLLVRHGHPAVAEAFLATRLGGQWGGAYGTMPAGLDLAPILERA 538 Query: 558 SV 559 V Sbjct: 539 LV 540 >SMc01359 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium meliloti Length = 550 Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/526 (42%), Positives = 299/526 (56%), Gaps = 14/526 (2%) Query: 25 NQARPALGFNAFDDDRALSGLIATIAPWATDKLSALGAHAGSESVQEAARLANKHEPTLL 84 NQ +P G NAF D + + +++ D+ LG + S QE AR+AN+ P L Sbjct: 15 NQPKPWSGVNAFRSDPLVVDITSSMPKTLRDEFDGLGRYVTSPEAQELARMANEGVPKLK 74 Query: 85 THDRYGNRNDWVEFHPAWHELMALAFRSEVHSLAWST---REPHGHLARAALSYLWNQIE 141 TH G R D VEFHPAWH LM + + +HS AW H RA YL Q+E Sbjct: 75 THGPRGERLDVVEFHPAWHALMRRSMTTGLHSSAWENLPDERGRSHKVRAIRFYLTAQLE 134 Query: 142 NGVGCPTGMAYAAIAGFSGKPQFNL-WRERTLAADYDPRRLPIEAKRAAVIGYAMTEKQG 200 G CP M A++A + P W + L+ YD P K A IG MTEKQG Sbjct: 135 CGHLCPLTMTSASVAAITASPAVQKEWAPKILSRKYDSSNRPWMQKSAVTIGMGMTEKQG 194 Query: 201 GSDLRETQTTARFVERGAHGEIYAITGHKWFFSVPVADGFYTLARTQSGVSCLFVPRLLP 260 G+D+R +TA V G IY +TGHKWF S P++D F LA+T+ G+ C VPRLL Sbjct: 195 GTDVRANTSTAERVGEG----IYRLTGHKWFMSAPMSDAFVMLAQTREGLGCFLVPRLLE 250 Query: 261 DGSANRIHIQRLKDKCGNRSNASSEIEYHDTWSILVGEEGRGIAEILSHAHLTRLDFAVG 320 DG AN + QRLKDK GNRSNASSE+E+ DT+ L+G GI IL LTRLD A+ Sbjct: 251 DGGANGLRFQRLKDKLGNRSNASSEVEFSDTFGFLLGTPDAGIRTILDMVTLTRLDCALA 310 Query: 321 SAGLMRQALSFALNHAQTRTAFGKPTSELPMQRNVLADLALESEAAMLGAFRVARATDGL 380 SAG+MR +L+ A++H + R FGK PM VLAD+AL+ AA +FR+A A D Sbjct: 311 SAGMMRASLAEAVHHTRGRKVFGKALVSQPMMTRVLADMALDVAAASALSFRLAEAFDNA 370 Query: 381 QTSEHERLLARVATPVMKFWNCQRAPAFTYECLQVHGGNGFIMENPMARLYREAPLNSIW 440 +S + AR+ TPV K+W C+ APA YE ++ GGNG++ E +AR YREAP+N+IW Sbjct: 371 HSSAEDAAYARIMTPVAKYWCCKIAPALIYEAMECMGGNGYVEERALARHYREAPVNAIW 430 Query: 441 EGTSNMMCMDVLRAMQRDANCRDAFVDELRAS--RGLNPVYDRSTDDLADRLRARYPDDG 498 EG+ N+M +DVLR + R R ++L A+ R L P ++ + L + D+G Sbjct: 431 EGSGNVMALDVLRVLGR----RKELFEQLFATIGRDLGPAGRKTIEVLRAAMSLCERDEG 486 Query: 499 HARALVTRMAHALQAAEMLRHGDTAAADLFVQSRLDADGMHVFGGL 544 AR LV ++A A AAE+ R G AD F++SRL A +G L Sbjct: 487 AARMLVEQLALAAAAAELYRLGAGRIADAFLESRLAAGWRSTYGML 532