BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0020.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value slr1871 [K] COG0583 Transcriptional regulator Syn Synechocystis 250 2e-66 RSc2327 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 235 1e-61 RSp0910 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 226 4e-59 SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 225 1e-58 PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 217 2e-56 >slr1871 [K] COG0583 Transcriptional regulator Syn Synechocystis Length = 295 Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/289 (42%), Positives = 182/289 (62%), Gaps = 1/289 (0%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MDK+ S+ AF +VV GSF+ A R++ L RS ++K V LE L VQLL+R+TR +P Sbjct: 1 MDKLESIYAFTQVVREGSFAAAARKMNLGRSTVNKMVIALENELKVQLLHRSTRKVTPTP 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 G ++E+++ IL++++ A+ +V+ L P+GLLR+NAPM+FGT+ + P +A FM ++ Sbjct: 61 TGIAFYEKSVQILADLEEAELSVSQLHGEPKGLLRVNAPMTFGTMYIAPLVAKFMALHSQ 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIAD-LESSSLIARKITPMPRVICASPDYLEKHGAPS 179 +++QL L D VD + +G+D+ +RIA LES+SLI + + ++CASP+YL G P Sbjct: 121 VEVQLTLEDRFVDAIAEGYDLLIRIAQPLESASLICQPLFQTKLLLCASPEYLAVRGMPQ 180 Query: 180 HPRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALI 239 DL+ H L YG+ G+QW+ G GE I + + C NN E L G GIAL+ Sbjct: 181 ALEDLQRHNCLLYGYSSGGSQWQFLGQAGEKVISVSGNFCSNNGEALAIAVAQGLGIALL 240 Query: 240 PEFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFL 288 P+FI L G ++ IL D+ LT+ IYP RHL+ KV+LF +FL Sbjct: 241 PQFIVQPYLEAGKMQIILPDYCLRELTVSLIYPVNRHLATKVKLFTEFL 289 >RSc2327 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 299 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/293 (41%), Positives = 176/293 (60%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MD++A++Q FV+ VE GS S A +L LS + V LEG+LGV+LLNRTTR S + Sbjct: 1 MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTD 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 G+L++ERA IL+E++AA + ++ PRG LRI+AP++FG+ L P LA+FM +PD Sbjct: 61 GGRLFYERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 + ++L L++ VD V++ FD R DL S L+AR++ P ++CASP YL+ G P Sbjct: 121 ITVELSLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAPHRLMLCASPGYLKMRGHPRT 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIP 240 P DLR H L + QW G DG I ++ E LR AV+G GI L P Sbjct: 181 PEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQP 240 Query: 241 EFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFG 293 + A+ ++ G L ILK + P +L+ +Y P R ++ K+R F+DF+ FG Sbjct: 241 AELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFG 293 >RSp0910 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 309 Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 183/299 (61%), Gaps = 6/299 (2%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MD+ +L AFV VVE G F+ A R+L L+ S++++ + LE SLG +L+NR+TR + E Sbjct: 1 MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTE 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 G Y++ A IL E+D+AD+ V+ L P GLLR+ P++FG L + PA+ F++ +P Sbjct: 61 AGAQYYDDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPG 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 ++L + L+D +V+ V+D DV +R+ L + +L+ARK+ P RVICASPDYL +HG P+ Sbjct: 121 MRLDIRLTDAMVNLVEDRIDVAIRLGALTAPNLVARKLAPHRRVICASPDYLGEHGTPAQ 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIP 240 PRDL H L + +L + W LT + + +L N +E+LR+ A+ G G+ L+P Sbjct: 181 PRDLAHHNCLLFDYLTGDSTWTLTRDGKREKVPVSGNLRANGSELLREAAMGGAGMLLMP 240 Query: 241 EFIAADALRKGGLKTILKDFWAPP------LTLYAIYPPTRHLSVKVRLFIDFLVQRFG 293 ++ D + G L +L+ + P ++A+Y P R S K+ F+DFL Q FG Sbjct: 241 TWLVGDDIAAGRLVPVLEPWTPTPGADEGESAIWAVYLPNRRGSKKLAGFLDFLAQHFG 299 >SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 298 Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 121/294 (41%), Positives = 177/294 (60%), Gaps = 4/294 (1%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 M + L+ F +VV TGS S AGR L S + ISK + LE LG +LL RTTR S E Sbjct: 1 MTNLGDLEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTE 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 GQ +++R L IL+ ++ A+ + S +G LRI+AP SFG + + P L FM+ +PD Sbjct: 61 AGQGFYDRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPD 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 L+L +VL+DD D V +GFD+ +RI +L SSL+ARK+ P+ R++CA+P Y+ +HGAP+ Sbjct: 121 LKLHIVLTDDFTDIVAEGFDLAIRIGELSDSSLVARKLAPVRRLLCAAPSYVARHGAPTE 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIP 240 +L H+ L + WKL G DG +P L N++E++R+ ++G GIAL Sbjct: 181 IGELAKHICLPAH---NNDNWKLEGPDGSLSYRPEGPLVTNSSEIIREAVIAGAGIALRS 237 Query: 241 EFIAADALRKGGLKTILKDF-WAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFG 293 + LR+G L +L + + LTL A+YP + L KVR FID+L +G Sbjct: 238 TWDIGRELREGRLVQVLPQWEGSHKLTLSAVYPSRQFLPAKVRQFIDYLAALYG 291 >PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 303 Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 179/297 (60%), Gaps = 2/297 (0%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MD+ ++QAF ++VE G+F +A L L R+++++ + LE LGVQLL RTTR S Sbjct: 1 MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 +GQ Y+ER + +L++++ A+ + + PRG LR++ P + G +R+ P L +F + YP+ Sbjct: 61 DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 L+LQL +D LVD +++G D LR+ +L SSL+ R + +P+V CAS YLE+HG P Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGELHDSSLVGRHLADLPQVTCASAAYLERHGHPRQ 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLT-GADGEHWIQPAWS-LCVNNAEVLRDVAVSGRGIAL 238 +L H+++ Y +G + DG P S + VNNA+ +G G+ Sbjct: 181 LAELGGHLAVNYQSPSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 239 IPEFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFGRE 295 P + A L G L+ +L ++ P L L+A+YP R LS +VR+F+D+LV+ FGR+ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWLVELFGRQ 297